Research graph
References from Risk factors for fluoroquinolone- and macrolide-resistance among swine Campylobacter coli using multi-layered chain graphs. Local targets link to admitted publications; unresolved targets remain external evidence.
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2019 · External reference
A historical review on antibiotic resistance of foodborne campylobacter
10.3389/fmicb.2019.01509 · 2019 · External reference
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Trends in fluoroquinolone resistance in Campylobacter
2018 · External reference
Genomic insights into the increased occurrence of campylobacteriosis caused by antimicrobial-resistant Campylobacter coli
10.1128/mbio.02835-22 · 2022 · External reference
Global epidemiology of Campylobacter infection
10.1128/cmr.00006-15 · 2015 · External reference
Preventing Campylobacter at the source: why is it so difficult?
10.1093/cid/cit555 · 2013 · External reference
Factors potentially linked with the occurrence of antimicrobial resistance in selected bacteria from cattle, chickens and pigs: a scoping review of publications for use in modelling of antimicrobial resistance (IAM.AMR Project)
10.1111/zph.12515 · 2018 · External reference
Associations of antimicrobial uses with antimicrobial resistance of fecal Escherichia coli from pigs on 47 farrow-to-finish farms in Ontario and British Columbia
2008 · External reference
Understanding the mechanisms and drivers of antimicrobial resistance
10.1016/s0140-6736(15)00473-0 · 2016 · External reference
Co-selection of resistance to antibiotics, biocides and heavy metals, and its relevance to foodborne pathogens
10.3390/antibiotics4040567 · 2015 · External reference
Antimicrobial resistance on farms: a review including biosecurity and the potential role of disinfectants in resistance selection
10.1111/1541-4337.12438 · 2019 · External reference
Persistence of antibiotic resistance in bacterial populations
10.1111/j.1574-6976.2011.00289.x · 2011 · External reference
Genomic screening of antimicrobial resistance markers in UK and US Campylobacter isolates highlights stability of resistance over an 18-year period
10.1128/aac.01687-21 · 2022 · External reference
Emerging patterns of fluoroquinolone resistance in Campylobacter jejuni in the UK
2022 · External reference
Global trends in antimicrobial resistance on organic and conventional farms
10.1038/s41598-023-47862-7 · 2023 · External reference
The chloramphenicol resistance gene cmlA is disseminated on transferable plasmids that confer multiple-drug resistance in swine Escherichia coli
10.1016/j.femsle.2004.12.017 · 2005 · External reference
Sequencing-based methods and resources to study antimicrobial resistance
2019 · External reference
Generalized linear mixed models: a review and some extensions
10.1007/s10985-007-9065-x · 2007 · External reference
Markov networks of collateral resistance: national antimicrobial resistance monitoring system surveillance results from Escherichia coli isolates 2004 -2012
2016 · External reference
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Structure learning in graphical modeling
10.1146/annurev-statistics-060116-053803 · 2017 · External reference
Learning mixed graphical models with separate sparsity parameters and stability-based model selection
10.1186/s12859-016-1039-0 · 2016 · External reference
Heterogeneous multi-layered network model for omics data integration and analysis
10.3389/fgene.2019.01381 · 2020 · External reference
Penalized maximum likelihood estimation of multi-layered Gaussian graphical models
2016 · External reference
Joint estimation and inference for data integration problems based on multiple multi-layered gaussian graphical models
2022 · External reference
Understanding tuberculosis epidemiology using structured statistical models
10.1016/j.artmed.2003.11.003 · 2004 · External reference
Identifying patient-level risk factors associated with non-β-lactam resistance outcomes in invasive MRSA infections in the United States using chain graphs
2022 · External reference
Longitudinal study of the persistence of antimicrobial-resistant campylobacter strains in distinct Swine production systems on farms, at slaughter, and in the environment
10.1128/aem.07723-11 · 2012 · External reference
AMRFinderPlus and the reference gene catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
10.1038/s41598-021-91456-0 · 2021 · External reference
Mechanisms of resistance to macrolides and lincosamides: nature of the resistance elements and their clinical implications
10.1086/324626 · 2002 · External reference
Epidemiological interpretation of studies examining the effect of antibiotic usage on resistance
10.1128/cmr.00001-13 · 2013 · External reference
Co-resistance: an opportunity for the bacteria and resistance genes
10.1016/j.coph.2011.07.007 · 2011 · External reference
Environmental and genetic modulation of the phenotypic expression of antibiotic resistance
10.1093/femsre/fux004 · 2017 · External reference
Evolutionary mechanisms shaping the maintenance of antibiotic resistance
10.1016/j.tim.2018.01.005 · 2018 · External reference
Role of efflux pumps and topoisomerase mutations in fluoroquinolone resistance in Campylobacter jejuni and Campylobacter coli
10.1128/aac.49.8.3347-3354.2005 · 2005 · External reference
Macrolide resistance in Campylobacter jejuni and Campylobacter coli
10.1093/jac/dkl210 · 2006 · External reference
The bacterial ribosome as a target for antibiotics
10.1038/nrmicro1265 · 2005 · External reference
An investigation of the molecular mechanisms contributing to high-level erythromycin resistance in Campylobacter
10.1016/j.ijantimicag.2005.08.019 · 2006 · External reference
Antimicrobial resistance, interspecies gene transfer in Campylobacter coli, Campylobacter jejuni isolated from food animals, poultry processing and retail meat in North Carolina 2018 –2019
2021 · External reference
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Association between selected antimicrobial resistance genes and antimicrobial exposure in Danish pig farms
10.1038/s41598-017-10092-9 · 2017 · External reference
Antimicrobial use and antimicrobial resistance monitoring in pig production in the United States of America
10.20506/rst.42.3348 · 2023 · External reference
Effect of antimicrobial use and production system on Campylobacter spp., Staphylococcus spp. and Salmonella spp. resistance in Spanish swine: a cross-sectional study
10.1111/zph.12790 · 2021 · External reference
Antimicrobial use, biosecurity, herd characteristics, and antimicrobial resistance in indicator Escherichia coli in ten Finnish pig farms
10.1016/j.prevetmed.2021.105408 · 2021 · External reference
Quantifying trade-offs between therapeutic efficacy and resistance dissemination for enrofloxacin dose regimens in cattle
10.1038/s41598-024-70741-8 · 2024 · External reference
Modeling the effect of tylosin phosphate on macrolide-resistant enterococci in feedlots and reducing resistance transmission
10.1089/fpd.2020.2835 · 2021 · External reference
From petri dishes to patients to populations: scales and evolutionary mechanisms driving antibiotic resistance
10.1146/annurev-micro-041522-102707 · 2024 · External reference
Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments
10.1016/j.scitotenv.2020.142702 · 2021 · External reference
Feed additives shift gut microbiota and enrich antibiotic resistance in swine gut
10.1016/j.scitotenv.2017.10.106 · 2018 · External reference
Antimicrobial resistance and its association with tolerance to heavy metals in agriculture production
10.1016/j.fm.2016.12.009 · 2017 · External reference
CmeABC functions as a multidrug efflux system in Campylobacter jejuni
10.1128/aac.46.7.2124-2131.2002 · 2002 · External reference
The evolution of Campylobacter jejuni and Campylobacter coli
10.1101/cshperspect.a018119 · 2015 · External reference
Ruminant and chicken: important sources of campylobacteriosis in France despite a variation of source attribution in 2009 and 2015
10.1038/s41598-018-27558-z · 2018 · External reference
Machine learning in epidemiology and health outcomes research
10.1146/annurev-publhealth-040119-094437 · 2020 · External reference
Stability approach to regularization selection (stars) for high dimensional graphical models
2010 · External reference
Review of causal discovery methods based on graphical models
10.3389/fgene.2019.00524 · 2019 · External reference
Aminoglycoside modifying enzymes
10.1016/j.drup.2010.08.003 · 2010 · External reference
The role of antibiotics and antibiotic resistance in nature
10.1111/j.1462-2920.2009.01972.x · 2009 · External reference
Whole-genome sequencing analysis accurately predicts antimicrobial resistance phenotypes in Campylobacter spp
10.1128/aem.02873-15 · 2015 · External reference
Whole genome-based characterisation of antimicrobial resistance and genetic diversity in Campylobacter jejuni and Campylobacter coli from ruminants
10.1038/s41598-021-88318-0 · 2021 · External reference
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The sequence read archive
10.1093/nar/gkq1019 · 2011 · External reference
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
10.1089/cmb.2012.0021 · 2012 · External reference
Prokka: rapid prokaryotic genome annotation
10.1093/bioinformatics/btu153 · 2014 · External reference
QUAST: quality assessment tool for genome assemblies
10.1093/bioinformatics/btt086 · 2013 · External reference
Regression shrinkage and selection via the lasso
10.1111/j.2517-6161.1996.tb02080.x · 1996 · External reference
Sparse inverse covariance estimation with the graphical lasso
10.1093/biostatistics/kxm045 · 2008 · External reference
