Research graph
References from PPI-ID: Streamlining protein-protein interaction prediction through domain and SLiM mapping. Local targets link to admitted publications; unresolved targets remain external evidence.
Understanding eukaryotic linear motifs and their role in cell signaling and regulation
10.2741/3175 · 2008 · External reference
ELM-the Eukaryotic Linear Motif Resource-2024 Update
10.1093/nar/gkad1058 · 2024 · External reference
3did: a catalog of domain-based interactions of known three-dimensional structure
10.1093/nar/gkt887 · 2014 · External reference
Bias in, bias out - AlphaFold-Multimer and the structural complexity of protein interfaces
10.1016/j.sbi.2025.103002 · 2025 · External reference
Highly accurate protein structure prediction with AlphaFold
10.1038/s41586-021-03819-2 · 2021 · External reference
10.1101/2021.10.04.463034
10.1101/2021.10.04.463034 · External reference
From interaction networks to interfaces, scanning intrinsically disordered regions using AlphaFold2
10.1038/s41467-023-44288-7 · 2024 · External reference
Systematic discovery of protein interaction interfaces using AlphaFold and experimental validation
10.1038/s44320-023-00005-6 · 2024 · External reference
InterPro in 2022
10.1093/nar/gkac993 · 2023 · External reference
3Dmol.js: molecular visualization with WebGL
10.1093/bioinformatics/btu829 · 2015 · External reference
The Bio3D packages for structural bioinformatics
10.1002/pro.3923 · 2021 · External reference
DOMINE: a comprehensive collection of known and predicted domain-domain interactions
10.1093/nar/gkq1229 · 2011 · External reference
The Protein Data Bank
10.1093/nar/28.1.235 · 2000 · External reference
PCNA, the maestro of the replication fork
10.1016/j.cell.2007.05.003 · 2007 · External reference
PCNA Structure and Function: Insights from Structures of PCNA Complexes and Post-translationally Modified PCNA.
10.1007/978-94-007-4572-8_15 · 2012 · External reference
Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
10.1016/0092-8674(94)90014-0 · 1994 · External reference
Structure of PCNA in complex with DNMT1 PIP box reveals the basis for the molecular mechanism of the interaction
10.1016/j.bbrc.2019.06.060 · 2019 · External reference
A connection rule for alpha-carbon coarse-grained elastic network models using chemical bond information
10.1016/j.jmgm.2005.09.006 · 2006 · External reference
X-ray crystal structure of an IkappaBbeta x NF-kappaB p65 homodimer complex
10.1074/jbc.m301022200 · 2003 · External reference
AlphaFold Protein Structure Database in 2024: Providing Structure Coverage for Over 214 Million Protein Sequences
10.1093/nar/gkad1011 · 2024 · External reference
PAE viewer: a webserver for the interactive visualization of the predicted aligned error for multimer structure predictions and crosslinks
10.1093/nar/gkad350 · 2023 · External reference
SLiMAn 2.0: meaningful navigation through peptide-protein interaction networks
10.1093/nar/gkae398 · 2024 · External reference
