Research graph
References from SBMLNetwork: A framework for standards-based visualization of biochemical models. Local targets link to admitted publications; unresolved targets remain external evidence.
Escher: a web application for building, sharing, and embedding data-rich visualizations of biological pathways
2015 · External reference
CellDesigner: a process diagram editor for gene-regulatory and biochemical networks
10.1016/s1478-5382(03)02370-9 · 2003 · External reference
MINERVA-a platform for visualization and curation of molecular interaction networks
10.1038/npjsba.2016.20 · 2016 · External reference
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
10.1093/bioinformatics/btg015 · 2003 · External reference
The systems biology graphical notation
10.1038/nbt.1558 · 2009 · External reference
CySBML: a Cytoscape plugin for SBML
10.1093/bioinformatics/bts432 · 2012 · External reference
CySBGN: a Cytoscape plug-in to integrate SBGN maps
10.1186/1471-2105-14-17 · 2013 · External reference
Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps
10.1093/bioinformatics/btaa850 · 2021 · External reference
Closing the gap between formats for storing layout information in systems biology
10.1093/bib/bbz067 · 2020 · External reference
The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core
10.1515/jib-2015-267 · 2015 · External reference
SBML Level 3 package: Render, Version 1, Release 1
10.1515/jib-2017-0078 · 2018 · External reference
SBMLDiagrams: a python package to process and visualize SBML layout and render
2023 · External reference
Alias4SBML: a python package for generating alias nodes in sbml models
2025 · External reference
Next generation simulation tools: the systems biology workbench and BioSPICE integration
10.1089/153623103322637670 · 2003 · External reference
LibSBML: an API library for SBML
10.1093/bioinformatics/btn051 · 2008 · External reference
Unresolved reference
External reference
Graph drawing by force-directed placement
1991 · External reference
Supporting the SBML layout extension
10.1093/bioinformatics/btl520 · 2006 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1145/2048147.2048224
10.1145/2048147.2048224 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Unresolved reference
External reference
Systems biology graphical notation markup language (SBGNML) version 0.3
10.1515/jib-2020-0016 · 2020 · External reference
Unresolved reference
External reference
KEGG: biological systems database as a model of the real world
10.1093/nar/gkae909 · 2025 · External reference
Mathematical analysis of a mechanism for autonomous metabolic oscillations in continuous culture of Saccharomyces cerevisiae
10.1016/s0014-5793(01)02562-5 · 2001 · External reference
Tellurium: An extensible python-based modeling environment for systems and synthetic biology
10.1016/j.biosystems.2018.07.006 · 2018 · External reference
Antimony: a modular model definition language
10.1093/bioinformatics/btp401 · 2009 · External reference
BiGG models: a platform for integrating, standardizing and sharing genome-scale models
2016 · External reference
Shu: visualization of high-dimensional biological pathways
10.1093/bioinformatics/btae140 · 2024 · External reference
Computational representation of developmental genetic regulatory networks
10.1016/j.ydbio.2005.04.023 · 2005 · External reference
Visualization, documentation, analysis, and communication of large-scale gene regulatory networks
10.1016/j.bbagrm.2008.07.014 · 2009 · External reference
