Research graph
References from IonBench: A benchmark of optimisation strategies for mathematical models of ion channel currents. Local targets link to admitted publications; unresolved targets remain external evidence.
Genetic algorithm-based personalized models of human cardiac action potential
10.1371/journal.pone.0231695 · 2020 · External reference
Genetic algorithm-based personalized models of human cardiac action potential
10.1371/journal.pone.0231695 · 2020 · External reference
A comparative survey of automated parameter-search methods for compartmental neural models
10.1023/a:1008972005316 · 1999 · External reference
A comparative survey of automated parameter-search methods for compartmental neural models
10.1023/a:1008972005316 · 1999 · External reference
Parameter estimation of ion current formulations requires hybrid optimization approach to be both accurate and reliable
10.3389/fbioe.2015.00209 · 2016 · External reference
Parameter estimation of ion current formulations requires hybrid optimization approach to be both accurate and reliable
10.3389/fbioe.2015.00209 · 2016 · External reference
Guidelines for benchmarking of optimization-based approaches for fitting mathematical models
10.1186/s13059-019-1887-9 · 2019 · External reference
Guidelines for benchmarking of optimization-based approaches for fitting mathematical models
10.1186/s13059-019-1887-9 · 2019 · External reference
Unresolved reference
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Unresolved reference
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Benchmarking optimization methods for parameter estimation in large kinetic models
10.1093/bioinformatics/bty736 · 2019 · External reference
Benchmarking optimization methods for parameter estimation in large kinetic models
10.1093/bioinformatics/bty736 · 2019 · External reference
10.1109/cec.2005.1554902
10.1109/cec.2005.1554902 · External reference
10.1109/cec.2005.1554902
10.1109/cec.2005.1554902 · External reference
10.1145/1830761.1830790
10.1145/1830761.1830790 · External reference
10.1145/1830761.1830790
10.1145/1830761.1830790 · External reference
COCO: a platform for comparing continuous optimizers in a black-box setting
10.1080/10556788.2020.1808977 · 2020 · External reference
COCO: a platform for comparing continuous optimizers in a black-box setting
10.1080/10556788.2020.1808977 · 2020 · External reference
Markov models for ion channels: versatility versus identifiability and speed
2009 · External reference
Markov models for ion channels: versatility versus identifiability and speed
2009 · External reference
Calibration of ionic and cellular cardiac electrophysiology models
10.1002/wsbm.1482 · 2020 · External reference
Calibration of ionic and cellular cardiac electrophysiology models
10.1002/wsbm.1482 · 2020 · External reference
Four ways to fit an ion channel model
10.1016/j.bpj.2019.08.001 · 2019 · External reference
Four ways to fit an ion channel model
10.1016/j.bpj.2019.08.001 · 2019 · External reference
Understanding the impact of numerical solvers on inference for differential equation models
10.1098/rsif.2023.0369 · 2024 · External reference
Understanding the impact of numerical solvers on inference for differential equation models
10.1098/rsif.2023.0369 · 2024 · External reference
A simplex method for function minimization
10.1093/comjnl/7.4.308 · 1965 · External reference
A simplex method for function minimization
10.1093/comjnl/7.4.308 · 1965 · External reference
A subspace, interior, and conjugate gradient method for large-scale bound-constrained minimization problems
10.1137/s1064827595289108 · 1999 · External reference
A subspace, interior, and conjugate gradient method for large-scale bound-constrained minimization problems
10.1137/s1064827595289108 · 1999 · External reference
Completely derandomized self-adaptation in evolution strategies
10.1162/106365601750190398 · 2001 · External reference
Completely derandomized self-adaptation in evolution strategies
10.1162/106365601750190398 · 2001 · External reference
10.1109/icnn.1995.488968
10.1109/icnn.1995.488968 · External reference
10.1109/icnn.1995.488968
10.1109/icnn.1995.488968 · External reference
Improving the hERG model fitting using a deep learning-based method
10.3389/fphys.2023.1111967 · 2023 · External reference
Improving the hERG model fitting using a deep learning-based method
10.3389/fphys.2023.1111967 · 2023 · External reference
Global parameter optimization for cardiac potassium channel gating models
10.1016/s0006-3495(90)82560-1 · 1990 · External reference
Global parameter optimization for cardiac potassium channel gating models
10.1016/s0006-3495(90)82560-1 · 1990 · External reference
10.1109/wsc.1998.746033
10.1109/wsc.1998.746033 · External reference
10.1109/wsc.1998.746033
10.1109/wsc.1998.746033 · External reference
Linking a genetic defect to its cellular phenotype in a cardiac arrhythmia
10.1038/23034 · 1999 · External reference
Linking a genetic defect to its cellular phenotype in a cardiac arrhythmia
10.1038/23034 · 1999 · External reference
10.1109/iembs.2003.1280502
10.1109/iembs.2003.1280502 · External reference
10.1109/iembs.2003.1280502
10.1109/iembs.2003.1280502 · External reference
Parameter estimation in cardiac ionic models
10.1016/j.pbiomolbio.2004.02.002 · 2004 · External reference
Parameter estimation in cardiac ionic models
10.1016/j.pbiomolbio.2004.02.002 · 2004 · External reference
A numerical approach to ion channel modelling using whole-cell voltage-clamp recordings and a genetic algorithm
10.1371/journal.pcbi.0030169 · 2007 · External reference
A numerical approach to ion channel modelling using whole-cell voltage-clamp recordings and a genetic algorithm
10.1371/journal.pcbi.0030169 · 2007 · External reference
Minimal model for human ventricular action potentials in tissue
10.1016/j.jtbi.2008.03.029 · 2008 · External reference
Minimal model for human ventricular action potentials in tissue
10.1016/j.jtbi.2008.03.029 · 2008 · External reference
10.1007/978-3-540-89208-3_601
10.1007/978-3-540-89208-3_601 · External reference
10.1007/978-3-540-89208-3_601
10.1007/978-3-540-89208-3_601 · External reference
Identification of Ikr kinetics and drug binding in native myocytes
10.1007/s10439-009-9690-5 · 2009 · External reference
Identification of Ikr kinetics and drug binding in native myocytes
10.1007/s10439-009-9690-5 · 2009 · External reference
A generic ionic model of cardiac action potentials
2010 · External reference
A generic ionic model of cardiac action potentials
2010 · External reference
10.21914/anziamj.v52i0.3812
10.21914/anziamj.v52i0.3812 · External reference
10.21914/anziamj.v52i0.3812
10.21914/anziamj.v52i0.3812 · External reference
Optimizing ion channel models using a parallel genetic algorithm on graphical processors
10.1016/j.jneumeth.2012.02.024 · 2012 · External reference
Optimizing ion channel models using a parallel genetic algorithm on graphical processors
10.1016/j.jneumeth.2012.02.024 · 2012 · External reference
Rapid genetic algorithm optimization of a mouse computational model: benefits for anthropomorphization of neonatal mouse cardiomyocytes
2012 · External reference
Rapid genetic algorithm optimization of a mouse computational model: benefits for anthropomorphization of neonatal mouse cardiomyocytes
2012 · External reference
Identification of the parameters of the Beeler-Reuter ionic equation with a partially perturbed particle swarm optimization
10.1109/tbme.2012.2216265 · 2012 · External reference
Identification of the parameters of the Beeler-Reuter ionic equation with a partially perturbed particle swarm optimization
10.1109/tbme.2012.2216265 · 2012 · External reference
An in silico canine cardiac midmyocardial action potential duration model as a tool for early drug safety assessment
10.1152/ajpheart.00808.2011 · 2012 · External reference
An in silico canine cardiac midmyocardial action potential duration model as a tool for early drug safety assessment
10.1152/ajpheart.00808.2011 · 2012 · External reference
Unresolved reference
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Unresolved reference
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Optimisation of ionic models to fit tissue action potentials: application to 3D atrial modelling
10.1155/2013/951234 · 2013 · External reference
Optimisation of ionic models to fit tissue action potentials: application to 3D atrial modelling
10.1155/2013/951234 · 2013 · External reference
In-silico modeling of glycosylation modulation dynamics in hERG ion channels and cardiac electrical signals
10.1109/jbhi.2013.2260864 · 2014 · External reference
In-silico modeling of glycosylation modulation dynamics in hERG ion channels and cardiac electrical signals
10.1109/jbhi.2013.2260864 · 2014 · External reference
Cell-specific cardiac electrophysiology models
10.1371/journal.pcbi.1004242 · 2015 · External reference
Cell-specific cardiac electrophysiology models
10.1371/journal.pcbi.1004242 · 2015 · External reference
Parameterization for in-silico modeling of ion channel interactions with drugs
10.1371/journal.pone.0150761 · 2016 · External reference
Parameterization for in-silico modeling of ion channel interactions with drugs
10.1371/journal.pone.0150761 · 2016 · External reference
Efficient parameterization of cardiac action potential models using a genetic algorithm
10.1063/1.5000354 · 2017 · External reference
Efficient parameterization of cardiac action potential models using a genetic algorithm
10.1063/1.5000354 · 2017 · External reference
Parameter optimization using Covariance Matrix Adaptation-Evolutionary Strategy (CMA-ES), an approach to investigate differences in channel properties between neuron subtypes
10.3389/fninf.2018.00047 · 2018 · External reference
Parameter optimization using Covariance Matrix Adaptation-Evolutionary Strategy (CMA-ES), an approach to investigate differences in channel properties between neuron subtypes
10.3389/fninf.2018.00047 · 2018 · External reference
Sinusoidal voltage protocols for rapid characterisation of ion channel kinetics
10.1113/jp275733 · 2018 · External reference
Sinusoidal voltage protocols for rapid characterisation of ion channel kinetics
10.1113/jp275733 · 2018 · External reference
Obtaining transition rates from single-channel data without initial parameter seeding
10.1080/19336950.2020.1732004 · 2020 · External reference
Obtaining transition rates from single-channel data without initial parameter seeding
10.1080/19336950.2020.1732004 · 2020 · External reference
Positive rate-dependent action potential prolongation by modulating potassium ion channels
10.14814/phy2.15356 · 2022 · External reference
Positive rate-dependent action potential prolongation by modulating potassium ion channels
10.14814/phy2.15356 · 2022 · External reference
Gradient-based parameter optimization method to determine membrane ionic current composition in human induced pluripotent stem cell-derived cardiomyocytes
10.1038/s41598-022-23398-0 · 2022 · External reference
Gradient-based parameter optimization method to determine membrane ionic current composition in human induced pluripotent stem cell-derived cardiomyocytes
10.1038/s41598-022-23398-0 · 2022 · External reference
Rapid characterization of hERG channel kinetics I: using an automated high-throughput system
10.1016/j.bpj.2019.07.029 · 2019 · External reference
Rapid characterization of hERG channel kinetics I: using an automated high-throughput system
10.1016/j.bpj.2019.07.029 · 2019 · External reference
Contributions of HERG K+ current to repolarization of the human ventricular action potential
10.1016/j.pbiomolbio.2007.07.011 · 2008 · External reference
Contributions of HERG K+ current to repolarization of the human ventricular action potential
10.1016/j.pbiomolbio.2007.07.011 · 2008 · External reference
Ionic mechanisms underlying human atrial action potential properties: insights from a mathematical model
1998 · External reference
Ionic mechanisms underlying human atrial action potential properties: insights from a mathematical model
1998 · External reference
Myokit: A simple interface to cardiac cellular electrophysiology
10.1016/j.pbiomolbio.2015.12.008 · 2016 · External reference
Myokit: A simple interface to cardiac cellular electrophysiology
10.1016/j.pbiomolbio.2015.12.008 · 2016 · External reference
SUNDIALS
10.1145/1089014.1089020 · 2005 · External reference
SUNDIALS
10.1145/1089014.1089020 · 2005 · External reference
Enabling new flexibility in the SUNDIALS suite of nonlinear and differential/algebraic equation solvers
10.1145/3539801 · 2022 · External reference
Enabling new flexibility in the SUNDIALS suite of nonlinear and differential/algebraic equation solvers
10.1145/3539801 · 2022 · External reference
A practical algorithm for solving dynamic membrane equations
10.1109/tbme.1978.326270 · 1978 · External reference
A practical algorithm for solving dynamic membrane equations
10.1109/tbme.1978.326270 · 1978 · External reference
10.1115/detc2005-85597
10.1115/detc2005-85597 · External reference
10.1115/detc2005-85597
10.1115/detc2005-85597 · External reference
SciPy 1.0: fundamental algorithms for scientific computing in Python
10.1038/s41592-019-0686-2 · 2020 · External reference
SciPy 1.0: fundamental algorithms for scientific computing in Python
10.1038/s41592-019-0686-2 · 2020 · External reference
Probabilistic Inference on Noisy Time Series (PINTS)
10.5334/jors.252 · 2019 · External reference
Probabilistic Inference on Noisy Time Series (PINTS)
10.5334/jors.252 · 2019 · External reference
Pymoo: multi-objective optimization in python
10.1109/access.2020.2990567 · 2020 · External reference
Pymoo: multi-objective optimization in python
10.1109/access.2020.2990567 · 2020 · External reference
10.1109/cec.2005.1554903
10.1109/cec.2005.1554903 · 2005 · External reference
10.1109/cec.2005.1554903
10.1109/cec.2005.1554903 · 2005 · External reference
New concepts for evaluating the performance of computational methods
2016 · External reference
New concepts for evaluating the performance of computational methods
2016 · External reference
Benchmark problems for dynamic modeling of intracellular processes
10.1093/bioinformatics/btz020 · 2019 · External reference
Benchmark problems for dynamic modeling of intracellular processes
10.1093/bioinformatics/btz020 · 2019 · External reference
Approaches to parameter estimation from model neurons and biological neurons
10.3390/a15050168 · 2022 · External reference
Approaches to parameter estimation from model neurons and biological neurons
10.3390/a15050168 · 2022 · External reference
Dynamic optimization of nonlinear processes with an enhanced scatter search method
10.1021/ie801717t · 2009 · External reference
Dynamic optimization of nonlinear processes with an enhanced scatter search method
10.1021/ie801717t · 2009 · External reference
Ion channel model reduction using manifold boundaries
10.1098/rsif.2022.0193 · 2022 · External reference
Ion channel model reduction using manifold boundaries
10.1098/rsif.2022.0193 · 2022 · External reference
Identification of structures for ion channel kinetic models
10.1371/journal.pcbi.1008932 · 2021 · External reference
Identification of structures for ion channel kinetic models
10.1371/journal.pcbi.1008932 · 2021 · External reference
Empirical quantification of predictive uncertainty due to model discrepancy by training with an ensemble of experimental designs: an application to ion channel kinetics
10.1007/s11538-023-01224-6 · 2023 · External reference
Empirical quantification of predictive uncertainty due to model discrepancy by training with an ensemble of experimental designs: an application to ion channel kinetics
10.1007/s11538-023-01224-6 · 2023 · External reference
Model-driven optimal experimental design for calibrating cardiac electrophysiology models
10.1016/j.cmpb.2023.107690 · 2023 · External reference
Model-driven optimal experimental design for calibrating cardiac electrophysiology models
10.1016/j.cmpb.2023.107690 · 2023 · External reference
