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References from An empirical model of aminoacylation kinetics for E. coli class I and II aminoacyl tRNA synthetases. Local targets link to admitted publications; unresolved targets remain external evidence.
Studies on the enzymatic utilization of amino acyl adenylates: the formation of adenosine triphosphate
10.1016/s0021-9258(18)64712-x · 1958 · External reference
Demonstration of two reaction pathways for the aminoacylation of tRNA. Application of the pulsed quenched flow technique
10.1021/bi00686a010 · 1975 · External reference
Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases
10.1016/j.ymeth.2007.09.007 · 2008 · External reference
Aminoacyl-tRNA synthetases in the bacterial world
10.1128/ecosalplus.esp-0002-2016 · 2016 · External reference
Aminoacyl-tRNA synthetases
10.1261/rna.071720.119 · 2020 · External reference
Kinetic analysis of the isoleucyl-tRNA synthetase mechanism: the next reaction cycle can start before the previous one ends
10.1002/2211-5463.12362 · 2017 · External reference
Analysis of the kinetic mechanism of arginyl-tRNA synthetase
10.1016/j.bbapap.2005.11.020 · 2006 · External reference
Catalysis of tRNA aminoacylation: single turnover to steady-state kinetics of tRNA synthetases
10.1021/jp305045w · 2012 · External reference
Distinct kinetic mechanisms of the two classes of aminoacyl-tRNA synthetases
10.1016/j.jmb.2006.06.015 · 2006 · External reference
Whole-cell modeling of E. coli confirms that in vitro tRNA aminoacylation measurements are insufficient to support cell growth and predicts a positive feedback mechanism regulating arginine biosynthesis
10.1093/nar/gkad435 · 2023 · External reference
The E. coli whole-cell modeling project
2021 · External reference
Selective charging of tRNA isoacceptors induced by amino-acid starvation
10.1038/sj.embor.7400341 · 2005 · External reference
Near-critical behavior of aminoacyl-tRNA pools in E. coli at rate-limiting supply of amino acids
10.1529/biophysj.104.051383 · 2005 · External reference
Mechanism of aminoacylation of tRNA. Proof of the aminoacyl adenylate pathway for the isoleucyl- and tyrosyl-tRNA synthetases from Escherichia coli K12
10.1021/bi00649a014 · 1976 · External reference
Tyrosyl-tRNA synthetase from Escherichia coli. Stoichiometry of ligand binding and half-of-the-sites reactivity in aminoacylation
10.1021/bi00686a009 · 1975 · External reference
An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening
10.1093/nar/gkad278 · 2023 · External reference
Kinetic discrimination of tRNA identity by the conserved motif 2 loop of a class II aminoacyl-tRNA synthetase
10.1016/j.molcel.2007.01.015 · 2007 · External reference
Characterization of isoleucyl-tRNA synthetase from Staphylococcus aureus. I: Kinetic mechanism of the substrate activation reaction studied by transient and steady-state techniques
10.1074/jbc.273.48.31680 · 1998 · External reference
The catalytic mechanism of glutamyl-tRNA synthetase of Escherichia coli. Evidence for a two-step aminoacylation pathway, and study of the reactivity of the intermediate complex
10.1111/j.1432-1033.1980.tb06004.x · 1980 · External reference
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
10.1038/nchembio.186 · 2009 · External reference
The intracellular concentration of pyrophosphate in the batch culture of Escherichia coli
10.1111/j.1432-1033.1982.tb06878.x · 1982 · External reference
Intracellular PPi concentration is not directly dependent on amount of inorganic pyrophosphatase in Escherichia coli K-12 cells
10.1128/jb.171.8.4498-4500.1989 · 1989 · External reference
Fluorescence studies of interactions between Escherichia coli valyl-tRNA synthetase and its substrates
10.1016/0022-2836(71)90251-8 · 1971 · External reference
Induced fit and kinetic mechanism of adenylation catalyzed by Escherichia coli threonyl-tRNA synthetase
10.1021/bi0355701 · 2003 · External reference
On the rate law and mechanism of the adenosine triphosphate–pyrophosphate isotope exchange reaction of amino acyl transfer ribonucleic acid synthetases
10.1021/bi00805a005 · 1970 · External reference
A stochastic model for simulating ribosome kinetics in vivo
10.1371/journal.pcbi.1007618 · 2020 · External reference
Modelling ribosome kinetics and translational control on dynamic mRNA
10.1371/journal.pcbi.1010870 · 2023 · External reference
Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources
10.1016/j.cell.2014.02.033 · 2014 · External reference
Modulation of chemical composition and other parameters of the cell at different exponential growth rates
10.1128/ecosal.5.2.3 · 2008 · External reference
Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
10.1006/jmbi.1996.0428 · 1996 · External reference
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
10.1126/science.1188308 · 2010 · External reference
Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins
10.1039/c3mb70119k · 2013 · External reference
From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions
10.15252/msb.20209536 · 2021 · External reference
The quantitative and condition-dependent Escherichia coli proteome
10.1038/nbt.3418 · 2016 · External reference
Proteome reallocation in Escherichia coli with increasing specific growth rate
10.1039/c4mb00721b · 2015 · External reference
Reduction of translating ribosomes enables Escherichia coli to maintain elongation rates during slow growth
10.1038/nmicrobiol.2016.231 · 2016 · External reference
Establishment of exponential growth after a nutritional shift-up in Escherichia coli B/r: accumulation of deoxyribonucleic acid, ribonucleic acid, and protein
10.1128/jb.129.2.1020-1033.1977 · 1977 · External reference
Particle-based simulation reveals macromolecular crowding effects on the michaelis-menten mechanism
10.1016/j.bpj.2019.06.017 · 2019 · External reference
Discharging tRNAs: a tug of war between translation and detoxification in Escherichia coli
10.1093/nar/gkw697 · 2016 · External reference
Intracellular condition of Escherichia coli transfer RNA
10.1073/pnas.55.4.839 · 1966 · External reference
Charging levels of four tRNA species in Escherichia coli Rel(+) and Rel(-) strains during amino acid starvation: a simple model for the effect of ppGpp on translational accuracy
10.1006/jmbi.2001.4525 · 2001 · External reference
Aminoacylation of hypomodified tRNAGlu in vivo
10.1006/jmbi.1998.2197 · 1998 · External reference
Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation
10.1126/science.aav3751 · 2020 · External reference
Energy charge and protein synthesis. Control of aminoacyl transfer ribonucleic acid synthetases
10.1016/s0021-9258(18)63412-x · 1970 · External reference
tRNA overexpression rescues peripheral neuropathy caused by mutations in tRNA synthetase
10.1126/science.abb3356 · 2021 · External reference
Quantities of individual aminoacyl-tRNA families and their turnover in Escherichia coli
10.1128/jb.158.3.769-776.1984 · 1984 · External reference
