Research graph
References from The R-loop grammar predicts R-loop formation under different topological constraints. Local targets link to admitted publications; unresolved targets remain external evidence.
S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation
10.1101/gad.280834.116 · 2016 · External reference
The affinity of the S9.6 antibody for double-stranded RNAs impacts the accurate mapping of R-loops in fission yeast
10.1016/j.jmb.2017.12.016 · 2018 · External reference
Prevalent, dynamic, and conserved R-loop structures associate with specific epigenomic signatures in mammals
10.1016/j.molcel.2016.05.032 · 2016 · External reference
R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters
10.1016/j.molcel.2012.01.017 · 2012 · External reference
The R-loop is a common chromatin feature of the Arabidopsis genome
10.1038/s41477-017-0004-x · 2017 · External reference
Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutieres syndrome
2015 · External reference
Permanganate/S1 nuclease footprinting reveals non-B DNA structures with regulatory potential across a Mammalian genome
2017 · External reference
Ultra-deep coverage single-molecule R-loop footprinting reveals principles of R-loop formation
10.1016/j.jmb.2020.02.014 · 2020 · External reference
Nascent connections: R-loops and chromatin patterning
10.1016/j.tig.2016.10.002 · 2016 · External reference
10.1007/978-3-642-79488-9_3
10.1007/978-3-642-79488-9_3 · External reference
R loops: new modulators of genome dynamics and function
10.1038/nrg3961 · 2015 · External reference
Prevalent, dynamic, and conserved R-loop structures associate with specific epigenomic signatures in mammals
10.1016/j.molcel.2016.05.032 · 2016 · External reference
Interplay between DNA sequence and negative superhelicity drives R-loop structures
10.1073/pnas.1819476116 · 2019 · External reference
Grammatical model of the regulation of gene expression
10.1073/pnas.89.20.9405 · 1992 · External reference
Gene structure prediction by linguistic methods
10.1006/geno.1994.1541 · 1994 · External reference
10.1017/cbo9780511790492
10.1017/cbo9780511790492 · External reference
Stochastic context-free grammars for tRNA modeling
10.1093/nar/22.23.5112 · 1994 · External reference
Characterization of R-loop structures using single-molecule R-loop footprinting and sequencing
10.1007/978-1-0716-0680-3_15 · 2020 · External reference
10.1093/oso/9780198567097.001.0001
10.1093/oso/9780198567097.001.0001 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Unresolved reference
External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1007/3-540-45014-9_1
10.1007/3-540-45014-9_1 · External reference
Unresolved reference
External reference
10.1007/978-3-030-57129-0_3
10.1007/978-3-030-57129-0_3 · External reference
10.1017/cbo9780511810633
10.1017/cbo9780511810633 · External reference
Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers
10.1093/nar/gky554 · 2018 · External reference
G clustering is important for the initiation of transcription-induced R-loops in vitro, whereas high G density without clustering is sufficient thereafter
10.1128/mcb.00139-09 · 2009 · External reference
Profiling small RNA reveals multimodal substructural signals in a Boltzmann ensemble
10.1093/nar/gku959 · 2014 · External reference
