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References from CytoSpatio: Learning cell type spatial relationships using multirange, multitype point process models. Local targets link to admitted publications; unresolved targets remain external evidence.
Effect of cell size on lipid synthesis by human adipose tissue in vitro
10.1016/s0022-2275(20)39547-x · 1971 · External reference
Significance of cell size and tissue structure in electrical trauma
10.1016/s0022-5193(88)80007-9 · 1988 · External reference
Vascular smooth muscle contractility depends on cell shape
10.1039/c1ib00061f · 2011 · External reference
Cell type-specific properties and environment shape tissue specificity of cancer genes
10.1038/srep20707 · 2016 · External reference
From cell shape to cell fate via the cytoskeleton - Insights from the epidermis
10.1016/j.yexcr.2019.03.016 · 2019 · External reference
Spatial relationships of microtubule-organizing centers and the contact area of cytotoxic T lymphocytes and target cells
10.1083/jcb.95.1.137 · 1982 · External reference
The spatial relationship between stem cells and their progeny in the basal layer of human epidermis: a new view based on whole-mount labelling and lineage analysis
10.1242/dev.126.11.2409 · 1999 · External reference
Analysis of spatial relationships in three dimensions: tools for the study of nerve cell patterning
10.1186/1471-2202-9-68 · 2008 · External reference
Imaging Invasion: Micro-CT imaging of adamantinomatous craniopharyngioma highlights cell type specific spatial relationships of tissue invasion
10.1186/s40478-016-0321-8 · 2016 · External reference
Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue
10.1073/pnas.1300136110 · 2013 · External reference
Multiplexed ion beam imaging of human breast tumors
10.1038/nm.3488 · 2014 · External reference
RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells
2015 · External reference
Highly multiplexed imaging of single cells using a high-throughput cyclic immunofluorescence method
10.1038/ncomms9390 · 2015 · External reference
Imaging Mass Cytometry
10.1002/cyto.a.23053 · 2017 · External reference
Deep Profiling of Mouse Splenic Architecture with CODEX Multiplexed Imaging
10.1016/j.cell.2018.07.010 · 2018 · External reference
Strategies for Accurate Cell Type Identification in CODEX Multiplexed Imaging Data
10.3389/fimmu.2021.727626 · 2021 · External reference
Interactive single-cell data analysis using Cellar
10.1038/s41467-022-29744-0 · 2022 · External reference
Analysis and Visualization of Spatial Transcriptomic Data
10.3389/fgene.2021.785290 · 2022 · External reference
Spatial Statistics for Understanding Tissue Organization
10.3389/fphys.2022.832417 · 2022 · External reference
histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data
10.1038/nmeth.4391 · 2017 · External reference
CytoMAP: A Spatial Analysis Toolbox Reveals Features of Myeloid Cell Organization in Lymphoid Tissues
10.1016/j.celrep.2020.107523 · 2020 · External reference
Giotto: a toolbox for integrative analysis and visualization of spatial expression data
10.1186/s13059-021-02286-2 · 2021 · External reference
A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially-resolved tissue phenotyping at single-cell resolution
10.1038/s41467-022-28470-x · 2022 · External reference
Tissue schematics map the specialization of immune tissue motifs and their appropriation by tumors
2022 · External reference
Visinity: Visual Spatial Neighborhood Analysis for Multiplexed Tissue Imaging Data
2023 · External reference
Spatial point processes and their applications.
2007 · External reference
A point process model for rainfall: further developments
1988 · External reference
Ecological information from spatial patterns of plants: insights from point process theory
10.1111/j.1365-2745.2009.01510.x · 2009 · External reference
Self-Exciting Point Process Modeling of Crime
10.1198/jasa.2011.ap09546 · 2011 · External reference
Multivariate point process models in social research
10.1016/0049-089x(86)90015-3 · 1986 · External reference
Automated Learning of Subcellular Variation among Punctate Protein Patterns and a Generative Model of Their Relation to Microtubules
10.1371/journal.pcbi.1004614 · 2015 · External reference
Point process models for localization and interdependence of punctate cellular structures
10.1002/cyto.a.22873 · 2016 · External reference
Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images
10.1186/1471-2105-11-372 · 2010 · External reference
Learning the sequence of influenza A genome assembly during viral replication using point process models and fluorescence in situ hybridization
10.1371/journal.pcbi.1006199 · 2019 · External reference
Identifying prognostic structural features in tissue sections of colon cancer patients using point pattern analysis
10.1002/sim.8046 · 2019 · External reference
Multitype markov point processes: some approximations
1984 · External reference
A marked point process model for tree crown extraction in plantations
10.1109/icip.2005.1529837 · 2005 · External reference
Marked point process hotspot maps for homicide and gun crime prediction in Chicago
10.1016/j.ijforecast.2014.01.004 · 2014 · External reference
Multitype Point Process Analysis of Spines on the Dendrite Network of a Neuron
10.1111/rssc.12054 · 2014 · External reference
Spatial statistics is a comprehensive tool for quantifying cell neighbor relationships and biological processes via tissue image analysis
10.1016/j.crmeth.2022.100348 · 2022 · External reference
Identification of spatial expression trends in single-cell gene expression data
10.1038/nmeth.4634 · 2018 · External reference
Quantification of spatial tumor heterogeneity in immunohistochemistry staining images
10.1093/bioinformatics/btaa965 · 2021 · External reference
Estimator for the pair–potential of a gibbsian point process
10.1080/02331888608801956 · 1986 · External reference
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
10.1038/s41586-019-1629-x · 2019 · External reference
A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer
10.1038/s41467-022-35238-w · 2023 · External reference
On parameter estimation for pairwise interaction point processes
1994 · External reference
Monte Carlo Methods of Inference for Implicit Statistical Models
10.1111/j.2517-6161.1984.tb01290.x · 1984 · External reference
A nonparametric estimator for pairwise-interaction point processes
10.1093/biomet/74.4.763 · 1987 · External reference
Area-interaction point processes
10.1007/bf01856536 · 1995 · External reference
Likelihood inference for spatial point processes.
10.1201/9780203738276-3 · 2019 · External reference
Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues and the tumor microenvironment
2022 · External reference
Imaging of germinal center selection events during affinity maturation
10.1126/science.1136736 · 2007 · External reference
T Cell/B Cell Collaboration and Autoimmunity: An Intimate Relationship
10.3389/fimmu.2018.01941 · 2018 · External reference
Evaluation of methods for generative modeling of cell and nuclear shape
10.1093/bioinformatics/bty983 · 2019 · External reference
Cytokit: a single-cell analysis toolkit for high dimensional fluorescent microscopy imaging
10.1186/s12859-019-3055-3 · 2019 · External reference
10.1201/b15326
10.1201/b15326 · 2013 · External reference
10.1201/b19708
10.1201/b19708 · 2015 · External reference
Approximating point process likelihoods with GLIM
1992 · External reference
Parameter estimation for marked Gibbs point processes through the maximum pseudo-likelihood method
1996 · External reference
Practical Maximum Pseudolikelihood for Spatial Point Patterns (with Discussion)
10.1111/1467-842x.00128 · 2000 · External reference
spatstat: AnRPackage for Analyzing Spatial Point Patterns
10.18637/jss.v012.i06 · 2005 · External reference
