Research graph
References from Topology across scales on heterogeneous cell data. Local targets link to admitted publications; unresolved targets remain external evidence.
Spatial analysis with SPIAT and spaSim to characterize and simulate tissue microenvironments
10.1038/s41467-023-37822-0 · 2023 · External reference
Bento: a toolkit for subcellular analysis of spatial transcriptomics data
10.1186/s13059-024-03217-7 · 2024 · External reference
SCIMAP: a python toolkit for integrated spatial analysis of multiplexed imaging data
10.21105/joss.06604 · 2024 · External reference
CytoMAP: a spatial analysis toolbox reveals features of myeloid cell organization in lymphoid tissues
10.1016/j.celrep.2020.107523 · 2020 · External reference
GraphCompass: spatial metrics for differential analyses of cell organization across conditions
2024 · External reference
Stability of persistence diagrams
10.1007/s00454-006-1276-5 · 2006 · External reference
Induced matchings and the algebraic stability of persistence barcodes
2015 · External reference
A survey of vectorization methods in topological data analysis
10.1109/tpami.2023.3308391 · 2023 · External reference
Topological data analysis of biological aggregation models
10.1371/journal.pone.0126383 · 2015 · External reference
Topological data analysis distinguishes parameter regimes in the Anderson-Chaplain model of angiogenesis
10.1371/journal.pcbi.1009094 · 2021 · External reference
Topological data analysis of zebrafish patterns
10.1073/pnas.1917763117 · 2020 · External reference
Toroidal topology of population activity in grid cells
10.1038/s41586-021-04268-7 · 2022 · External reference
A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes
10.1038/s41593-022-01167-6 · 2022 · External reference
Topological data analysis of contagion maps for examining spreading processes on networks
10.1038/ncomms8723 · 2015 · External reference
Topological data analysis of task-based fMRI data from experiments on schizophrenia
10.1088/2632-072x/abb4c6 · 2021 · External reference
Analyzing collective motion with machine learning and topology
10.1063/1.5125493 · 2019 · External reference
The theory of multidimensional persistence
10.1007/s00454-009-9176-0 · 2009 · External reference
Multiparameter persistent homology landscapes identify immune cell spatial patterns in tumors
10.1073/pnas.2102166118 · 2021 · External reference
Multiscale topology classifies cells in subcellular spatial transcriptomics
10.1038/s41586-024-07563-1 · 2024 · External reference
Deep profiling of mouse splenic architecture with CODEX multiplexed imaging
10.1016/j.cell.2018.07.010 · 2018 · External reference
Single cell spatial analysis reveals inflammatory foci of immature neutrophil and CD8 T cells in COVID-19 lungs
10.1038/s41467-023-42421-0 · 2023 · External reference
On the shape of a set of points in the plane
10.1109/tit.1983.1056714 · 1983 · External reference
The union of balls and its dual shape
10.1007/bf02574053 · 1995 · External reference
A weak characterisation of the Delaunay triangulation
10.1007/s10711-008-9261-1 · 2008 · External reference
Unresolved reference
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Unresolved reference
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Persistence images: a stable vector representation of persistent homology
2017 · External reference
Clique topology reveals intrinsic geometric structure in neural correlations
10.1073/pnas.1506407112 · 2015 · External reference
A topological representation of branching neuronal morphologies
10.1007/s12021-017-9341-1 · 2018 · External reference
Predominant role of immunoglobulin g in the pathogenesis of splenomegaly in murine lupus
10.3389/fimmu.2019.03020 · 2020 · External reference
Successive changes of the cellular composition in lymphoid organs of MRL-Mp/lpr-lpr mice during the development of lymphoproliferative disease as investigated in cryosections
10.1016/0090-1229(88)90061-x · 1988 · External reference
Anatomy of autoantibody production: dominant localization of antibody-producing cells to T cell zones in Fas-deficient mice
10.1016/1074-7613(95)90179-5 · 1995 · External reference
