Research graph
References from Mouse-Specific Single cell cytokine activity prediction and Estimation (MouSSE). Local targets link to admitted publications; unresolved targets remain external evidence.
Cytokines: from clinical significance to quantification
2021 · External reference
Pro-inflammatory and anti-inflammatory interleukins in infectious diseases: a comprehensive review
10.3390/tropicalmed9010013 · 2024 · External reference
CAR T cell-induced cytokine release syndrome is mediated by macrophages and abated by IL-1 blockade
10.1038/s41591-018-0041-7 · 2018 · External reference
An overview of cytokines and cytokine antagonists as therapeutic agents
10.1111/j.1749-6632.2009.05382.x · 2009 · External reference
Current development status of cytokines for cancer immunotherapy
10.4062/biomolther.2023.196 · 2024 · External reference
mRNA-Seq whole-transcriptome analysis of a single cell
10.1038/nmeth.1315 · 2009 · External reference
A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications
10.1186/s13073-017-0467-4 · 2017 · External reference
Normalizing single-cell RNA sequencing data: challenges and opportunities
10.1038/nmeth.4292 · 2017 · External reference
Consequences and opportunities arising due to sparser single-cell RNA-seq datasets
10.1186/s13059-023-02933-w · 2023 · External reference
Eleven grand challenges in single-cell data science
10.1186/s13059-020-1926-6 · 2020 · External reference
A systematic evaluation of single-cell RNA-sequencing imputation methods
10.1186/s13059-020-02132-x · 2020 · External reference
SPECK: an unsupervised learning approach for cell surface receptor abundance estimation for single-cell RNA-sequencing data
10.1093/bioadv/vbad073 · 2023 · External reference
STREAK: a supervised cell surface receptor abundance estimation strategy for single cell RNA-sequencing data using feature selection and thresholded gene set scoring
10.1371/journal.pcbi.1011413 · 2023 · External reference
Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis
10.1038/nmeth.3734 · 2016 · External reference
Pathway level analysis of gene expression using singular value decomposition
10.1186/1471-2105-6-225 · 2005 · External reference
Variance-adjusted Mahalanobis (VAM): a fast and accurate method for cell-specific gene set scoring
10.1093/nar/gkaa582 · 2020 · External reference
Cytokine and cytokine receptor pleiotropy and redundancy
10.1074/jbc.r200003200 · 2002 · External reference
Molecular and cellular factors determining the functional pleiotropy of cytokines
10.1111/febs.16420 · 2023 · External reference
Deciphering cell-cell interactions and communication from gene expression
10.1038/s41576-020-00292-x · 2021 · External reference
NicheNet: modeling intercellular communication by linking ligands to target genes
10.1038/s41592-019-0667-5 · 2020 · External reference
Inference and analysis of cell-cell communication using CellChat
10.1038/s41467-021-21246-9 · 2021 · External reference
CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes
10.1038/s41596-020-0292-x · 2020 · External reference
SingleCellSignalR: inference of intercellular networks from single-cell transcriptomics
10.1093/nar/gkaa183 · 2020 · External reference
Single-cell pair-wise relationships untangled by composite embedding model
10.1016/j.isci.2023.106025 · 2023 · External reference
Single-cell colocalization analysis using a deep generative model
2024 · External reference
The diversification of methods for studying cell-cell interactions and communication
10.1038/s41576-023-00685-8 · 2024 · External reference
Transparency and the black box problem: why we do not trust AI
10.1007/s13347-021-00477-0 · 2021 · External reference
Transfer of regulatory knowledge from human to mouse for functional genomics analysis
10.1016/j.bbagrm.2019.194431 · 2020 · External reference
10.1101/2023.10.17.562739
10.1101/2023.10.17.562739 · External reference
Systematic investigation of cytokine signaling activity at the tissue and single-cell levels
10.1038/s41592-021-01274-5 · 2021 · External reference
Dictionary of immune responses to cytokines at single-cell resolution
10.1038/s41586-023-06816-9 · 2024 · External reference
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19
10.1038/s41591-020-0901-9 · 2020 · External reference
Dictionary learning for integrative, multimodal and scalable single-cell analysis
10.1038/s41587-023-01767-y · 2024 · External reference
DestVI identifies continuums of cell types in spatial transcriptomics data
10.1038/s41587-022-01272-8 · 2022 · External reference
Quantitative single-cell interactomes in normal and virus-infected mouse lungs
2020 · External reference
Analysis of single-cell RNA-Seq identifies cell-cell communication associated with tumor characteristics
10.1016/j.celrep.2018.10.047 · 2018 · External reference
Comprehensive visualization of cell-cell interactions in single-cell and spatial transcriptomics with NICHES
2023 · External reference
10.1101/2024.01.29.576933
10.1101/2024.01.29.576933 · External reference
Perturbation-response genes reveal signaling footprints in cancer gene expression
10.1038/s41467-017-02391-6 · 2018 · External reference
Building predictive models in R using the caret package
10.18637/jss.v028.i05 · 2008 · External reference
Human genetic and immunological determinants of critical COVID-19 pneumonia
10.1038/s41586-022-04447-0 · 2022 · External reference
Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19
2020 · External reference
Interleukin-6 and the determinants of severe COVID-19: a retrospective cohort study
10.1097/md.0000000000036037 · 2023 · External reference
Purification of recombinant human interferon-epsilon and oligonucleotide microarray analysis of interferon-epsilon-regulated genes
10.1016/j.pep.2006.12.013 · 2007 · External reference
The regulation of antiviral activity of interferon epsilon
10.3389/fmicb.2022.1006481 · 2022 · External reference
The Molecular Signatures Database (MSigDB) hallmark gene set collection
10.1016/j.cels.2015.12.004 · 2015 · External reference
Single-cell analysis of diverse pathogen responses defines a molecular roadmap for generating antigen-specific immunity
2019 · External reference
SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks
10.1093/bioinformatics/btae072 · 2024 · External reference
Leukemia inhibitory factor is an anti-inflammatory and analgesic cytokine
10.1523/jneurosci.18-14-05456.1998 · 1998 · External reference
JAK inhibitors dampen activation of interferon-stimulated transcription of ACE2 isoforms in human airway epithelial cells
10.1038/s42003-021-02167-1 · 2021 · External reference
