Research graph
References from OmnibusX: A unified platform for accessible multi-omics analysis. Local targets link to admitted publications; unresolved targets remain external evidence.
SCANPY: large-scale single-cell gene expression data analysis
10.1186/s13059-017-1382-0 · 2018 · External reference
Dictionary learning for integrative, multimodal and scalable single-cell analysis
10.1038/s41587-023-01767-y · 2024 · External reference
Automated cell annotation in scRNA-seq data using unique marker gene sets
2024 · External reference
SciPy 1.0: fundamental algorithms for scientific computing in Python
10.1038/s41592-019-0686-2 · 2020 · External reference
The UCSC Genome Browser
2011 · External reference
Ensembl 2023
10.1093/nar/gkac958 · 2023 · External reference
PyDESeq2: a python package for bulk RNA-seq differential expression analysis
10.1093/bioinformatics/btad547 · 2023 · External reference
Gene Set Enrichment Analysis (GSEA) for Interpreting Gene Expression Profiles
10.2174/157489307780618231 · 2007 · External reference
SCENIC: single-cell regulatory network inference and clustering
10.1038/nmeth.4463 · 2017 · External reference
Molecular signatures database (MSigDB) 3.0
10.1093/bioinformatics/btr260 · 2011 · External reference
Characterization of cell fate probabilities in single-cell data with Palantir
10.1038/s41587-019-0068-4 · 2019 · External reference
CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes
10.1038/s41596-020-0292-x · 2020 · External reference
The Gene Ontology (GO) database and informatics resource
2004 · External reference
