Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Research graph
References from Differential equation modeling of cell population dynamics in skeletal muscle regeneration from single-cell transcriptomic data. Local targets link to admitted publications; unresolved targets remain external evidence.
Skeletal muscle: a review of molecular structure and function, in health and disease
10.1002/wsbm.1462 · 2020 · External reference
Satellite cell of skeletal muscle fibers
10.1083/jcb.9.2.493 · 1961 · External reference
Pax7 is required for the specification of myogenic satellite cells
10.1016/s0092-8674(00)00066-0 · 2000 · External reference
Extraocular muscle satellite cells are high performance myo-engines retaining efficient regenerative capacity in dystrophin deficiency
10.1016/j.ydbio.2014.08.035 · 2015 · External reference
The role of supporting cell populations in satellite cell mediated muscle repair
10.3390/cells12151968 · 2023 · External reference
Building muscle: molecular regulation of myogenesis
10.1101/cshperspect.a008342 · 2012 · External reference
10.1142/9789814280303_0028
10.1142/9789814280303_0028 · External reference
A mathematical model of skeletal muscle disease and immune response in the mdx mouse
10.1155/2014/871810 · 2014 · External reference
A mathematical model of skeletal muscle regeneration
10.1002/mma.4908 · 2018 · External reference
Mathematical model of muscle wasting in cancer cachexia
10.3390/jcm9072029 · 2020 · External reference
A simple model of immune and muscle cell crosstalk during muscle regeneration
10.1016/j.mbs.2021.108543 · 2021 · External reference
Theoretical and numerical study of a skeletal muscle regeneration model with inflammatory response
10.1080/00207160.2024.2362786 · 2024 · External reference
Agent-based computational model investigates muscle-specific responses to disuse-induced atrophy
2015 · External reference
In silico and in vivo experiments reveal M-CSF injections accelerate regeneration following muscle laceration
10.1007/s10439-016-1707-2 · 2017 · External reference
Agent-based model illustrates the role of the microenvironment in regeneration in healthy and mdx skeletal muscle
2018 · External reference
Multiscale coupling of an agent-based model of tissue fibrosis and a logic-based model of intracellular signaling
10.3389/fphys.2019.01481 · 2019 · External reference
Computational models provide insight into in vivo studies and reveal the complex role of fibrosis in mdx muscle regeneration
10.1007/s10439-020-02566-1 · 2021 · External reference
Agent-based model provides insight into the mechanisms behind failed regeneration following volumetric muscle loss injury
10.1371/journal.pcbi.1008937 · 2021 · External reference
Delayed skeletal muscle repair following inflammatory damage in simulated agent-based models of muscle regeneration
10.1371/journal.pcbi.1011042 · 2023 · External reference
Agent-based model demonstrates the impact of nonlinear, complex interactions between cytokinces on muscle regeneration
10.7554/elife.91924.3 · 2024 · External reference
Duchenne muscular dystrophy
10.1038/s41572-021-00248-3 · 2021 · External reference
Stability and phase transitions in a mathematical model of Duchenne muscular dystrophy
10.1016/j.jtbi.2009.05.037 · 2009 · External reference
The technology and biology of single-cell RNA sequencing
10.1016/j.molcel.2015.04.005 · 2015 · External reference
Single-cell RNA sequencing technologies and bioinformatics pipelines
10.1038/s12276-018-0071-8 · 2018 · External reference
Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm
10.1186/s13059-016-1033-x · 2016 · External reference
A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation
10.1182/blood-2016-05-716480 · 2016 · External reference
SLICE: determining cell differentiation and lineage based on single cell entropy
2017 · External reference
Stem cell differentiation trajectories in Hydra resolved at single-cell resolution
10.1126/science.aav9314 · 2019 · External reference
Plant stem-cell organization and differentiation at single-cell resolution
10.1073/pnas.2018788117 · 2020 · External reference
Single-cell transcriptomics reveals a population of dormant neural stem cells that become activated upon brain injury
10.1016/j.stem.2015.07.002 · 2015 · External reference
scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling
2019 · External reference
Dental cell type atlas reveals stem and differentiated cell types in mouse and human teeth
10.1038/s41467-020-18512-7 · 2020 · External reference
Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration
10.1038/s42003-021-02810-x · 2021 · External reference
Single-cell analysis of the muscle stem cell hierarchy identifies heterotypic communication signals involved in skeletal muscle regeneration
10.1016/j.celrep.2020.02.067 · 2020 · External reference
Temporal dynamics and heterogeneity of cell populations during skeletal muscle regeneration
10.1016/j.isci.2020.100993 · 2020 · External reference
Transcriptional reprogramming of skeletal muscle stem cells by the niche environment
10.1038/s41467-023-36265-x · 2023 · External reference
Muscle injury: review of experimental models
10.1016/j.jelekin.2013.07.009 · 2013 · External reference
Comparative study of injury models for studying muscle regeneration in mice
10.1371/journal.pone.0147198 · 2016 · External reference
Satellite cells and the muscle stem cell niche
10.1152/physrev.00043.2011 · 2013 · External reference
Skeletal muscle regeneration and impact of aging and nutrition
10.1016/j.arr.2015.12.004 · 2016 · External reference
Muscle injuries and strategies for improving their repair
10.1186/s40634-016-0051-7 · 2016 · External reference
Regulatory interactions between muscle and the immune system during muscle regeneration
10.1152/ajpregu.00735.2009 · 2010 · External reference
Macrophage activation and skeletal muscle healing following traumatic injury
10.1002/path.4301 · 2014 · External reference
The basis of muscle regeneration
10.1155/2014/612471 · 2014 · External reference
Inflammatory monocytes recruited after skeletal muscle injury switch into antiinflammatory macrophages to support myogenesis
10.1084/jem.20070075 · 2007 · External reference
Monocyte/macrophage-derived IGF-1 orchestrates murine skeletal muscle regeneration and modulates autocrine polarization
10.1038/mt.2015.66 · 2015 · External reference
Macrophages promote muscle membrane repair and muscle fibre growth and regeneration during modified muscle loading in mice in vivo
10.1113/jphysiol.2006.118265 · 2007 · External reference
The role of innate and adaptive immune cells in skeletal muscle regeneration
10.3390/ijms22063265 · 2021 · External reference
The role of neutrophils in injury and repair following muscle stretch
10.1111/j.1469-7580.2006.00543.x · 2006 · External reference
Infiltrating macrophages are broadly activated at the early stage to support acute skeletal muscle injury repair
10.1016/j.jneuroim.2018.01.004 · 2018 · External reference
Skeletal muscle regeneration is modulated by inflammation
10.1016/j.jot.2018.01.002 · 2018 · External reference
More friend than foe: the emerging role of neutrophils in tissue repair
10.1172/jci124616 · 2019 · External reference
Neutrophils provide a favorable IL-1-mediated immunometabolic niche that primes GLUT4 translocation and performance in skeletal muscles
10.1016/j.celrep.2018.04.067 · 2018 · External reference
Analysis of sensitivity and specificity: precise recognition of neutrophils during regeneration of contused skeletal muscle in rats
10.1080/20961790.2020.1713432 · 2020 · External reference
Neutrophils and wound repair: positive actions and negative reactions
10.1089/wound.2012.0383 · 2013 · External reference
Neutrophil beta2 integrins: moderators of life or death decisions
10.1016/j.it.2005.05.002 · 2005 · External reference
Peculiarities of cell death mechanisms in neutrophils
10.1038/cdd.2011.75 · 2011 · External reference
Macrophage plasticity in skeletal muscle repair
10.1155/2014/560629 · 2014 · External reference
Myeloid cell responses to contraction-induced injury differ in muscles of young and old mice
10.1093/gerona/gly086 · 2018 · External reference
Incorporation of macrophages into engineered skeletal muscle enables enhanced muscle regeneration
10.1038/s41551-018-0290-2 · 2018 · External reference
Macrophages are key regulators of stem cells during skeletal muscle regeneration and diseases
10.1155/2019/4761427 · 2019 · External reference
CD177: a member of the Ly-6 gene superfamily involved with neutrophil proliferation and polycythemia vera
10.1186/1479-5876-2-8 · 2004 · External reference
Ccl2 and Ccl3 mediate neutrophil recruitment via induction of protein synthesis and generation of lipid mediators
10.1161/atvbaha.109.193268 · 2009 · External reference
Comparison of gene expression profiles between human and mouse monocyte subsets
10.1182/blood-2009-07-235028 · 2010 · External reference
Expression of VEGF receptors on endothelial cells in mouse skeletal muscle
10.1371/journal.pone.0044791 · 2012 · External reference
Regulation of muscle stem cell functions: a focus on the p38 MAPK signaling pathway
10.3389/fcell.2016.00091 · 2016 · External reference
In situ macrophage phenotypic transition is affected by altered cellular composition prior to acute sterile muscle injury
10.1113/jp274361 · 2017 · External reference
IRF5 guides monocytes toward an inflammatory CD11c+ macrophage phenotype and promotes intestinal inflammation
10.1126/sciimmunol.aax6085 · 2020 · External reference
Scleraxis is required for the growth of adult tendons in response to mechanical loading
10.1172/jci.insight.138295 · 2020 · External reference
Single-cell transcriptome atlas of murine endothelial cells
10.1016/j.cell.2020.01.015 · 2020 · External reference
Fibro-adipogenic progenitors in skeletal muscle homeostasis, regeneration and diseases
10.1098/rsob.210110 · 2021 · External reference
NG2/CSPG4, CD146/MCAM and VAP1/AOC3 are regulated by myocardin-related transcription factors in smooth muscle cells
10.1038/s41598-021-85335-x · 2021 · External reference
Single-cell analysis of skeletal muscle macrophages reveals age-associated functional subpopulations
10.7554/elife.77974 · 2022 · External reference
A single-cell transcriptomic inventory of murine smooth muscle cells
10.1016/j.devcel.2022.09.015 · 2022 · External reference
Heterogeneous skeletal muscle cell and nucleus populations identified by single-cell and single-nucleus resolution transcriptome assays
10.3389/fgene.2022.835099 · 2022 · External reference
Regulation of skeletal muscle regeneration by CCR2-activating chemokines is directly related to macrophage recruitment
10.1152/ajpregu.00797.2009 · 2010 · External reference
Muscle stem cells contribute to myofibres in sedentary adult mice
10.1038/ncomms8087 · 2015 · External reference
Myonuclei acquired by overload exercise precede hypertrophy and are not lost on detraining
10.1073/pnas.0913935107 · 2010 · External reference
Macrophages recruited via CCR2 produce insulin-like growth factor-1 to repair acute skeletal muscle injury
10.1096/fj.10-171579 · 2011 · External reference
Satellite cells and skeletal muscle regeneration
10.1002/j.2040-4603.2015.tb00646.x · 2015 · External reference
A CREB-C/EBPbeta cascade induces M2 macrophage-specific gene expression and promotes muscle injury repair
10.1073/pnas.0908641106 · 2009 · External reference
Unresolved reference
2007 · External reference
Simulating tissue mechanics with agent-based models: concepts, perspectives and some novel results
10.1007/s40571-015-0082-3 · 2015 · External reference
Unresolved reference
2021 · External reference
Human skeletal muscle satellite cells: aging, oxidative stress and the mitotic clock
10.1016/s0531-5565(02)00129-8 · 2002 · External reference
Disease-associated metabolic alterations that impact satellite cells and muscle regeneration: perspectives and therapeutic outlook
10.1186/s12986-021-00565-0 · 2021 · External reference
Dynamics of cardio-muscular networks in exercise and fatigue
10.1113/jp286963 · 2025 · External reference
Relationship of DUX4 and target gene expression in FSHD myocytes
10.1002/humu.24171 · 2021 · External reference
Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells
10.1038/s41467-020-20064-9 · 2020 · External reference
Multiplexed RNAscope and immunofluorescence on whole-mount skeletal myofibers and their associated stem cells
2019 · External reference
Origins, potency, and heterogeneity of skeletal muscle fibro-adipogenic progenitors-time for new definitions
10.1186/s13395-021-00265-6 · 2021 · External reference
Three distinct cell populations express extracellular matrix proteins and increase in number during skeletal muscle fibrosis
10.1152/ajpcell.00226.2016 · 2017 · External reference
Unresolved reference
External reference
Dictionary learning for integrative, multimodal and scalable single-cell analysis
10.1038/s41587-023-01767-y · 2024 · External reference