Research graph
References from Omics data discovery agents: Agent-supported retrieval, reanalysis, and synthesis of published omics data. Local targets link to admitted publications; unresolved targets remain external evidence.
The PRIDE database at 20 years: 2025 Update
2025 · External reference
Assembling the community-scale discoverable human proteome
2018 · External reference
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
10.1093/nar/30.1.207 · 2002 · External reference
NCBI GEO: Archive for functional genomics data sets--update
2013 · External reference
The Sequence Read Archive: A decade more of explosive growth
10.1093/nar/gkab1053 · 2022 · External reference
The availability of research data declines rapidly with article age
10.1016/j.cub.2013.11.014 · 2014 · External reference
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Unifying large language models and knowledge graphs: A roadmap
10.1109/tkde.2024.3352100 · 2024 · External reference
Biomni: A general-purpose biomedical AI agent
2025 · External reference
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DIA-NN: Neural networks and interference correction enable deep proteome coverage in high throughput
10.1038/s41592-019-0638-x · 2020 · External reference
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
10.1038/nprot.2016.136 · 2016 · External reference
UniProt: The universal protein knowledgebase in 2025
10.1093/nar/gkae1010 · 2025 · External reference
Salmon provides fast and bias-aware quantification of transcript expression
10.1038/nmeth.4197 · 2017 · External reference
Proteomics and phosphoproteomics revealed dysregulated kinases and potential therapy for liver fibrosis
10.1016/j.mcpro.2025.100991 · 2025 · External reference
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
10.1038/nbt.2839 · 2014 · External reference
iProX: An integrated proteome resource
2019 · External reference
Impact of PPP1R1A knockdown on the proteomic landscape of INS-1 cells: A focus on significant modulated pathways
10.1021/acs.jproteome.5c00889 · 2026 · External reference
Quantitative proteomics identifies potential molecular adaptations in mouse models of congenital stationary night blindness type 2
10.1016/j.mcpro.2025.101462 · 2025 · External reference
Seizure evolution in a mouse model of West syndrome involves complex and time-dependent synapse remodeling, gliosis and alterations in lipid metabolism
2025 · External reference
Hepatic stellate cell-derived microfibrillar-associated protein 2 prevents liver fibrosis by regulating extracellular matrix and inflammation
10.7150/thno.109771 · 2025 · External reference
Dynamics of compartment-specific proteomic landscapes of hepatotoxic and cholestatic models of liver fibrosis
10.7554/elife.98023 · 2025 · External reference
A proteomics resource investigating fibrosis: Proof-of-concept for identifying novel drug candidates
10.1002/pmic.70090 · 2026 · External reference
Clusterin attenuates hepatic fibrosis by inhibiting hepatic stellate cell activation and downregulating the Smad3 signaling pathway
10.3390/cells8111442 · 2019 · External reference
Clusterin drives fiber endocytosis by mesothelial cells to resolve liver fibrosis
10.1053/j.gastro.2025.08.022 · 2026 · External reference
Association of differentially altered liver fibrosis with deposition of TGFBi in stabilin-deficient mice
10.3390/ijms241310969 · 2023 · External reference
TGFBI promotes liver fibrosis through remodeling the profibrotic microenvironment by a positive feedback regulatory loop
10.1038/s42003-026-09601-2 · 2026 · External reference
Hepatokine α1-microglobulin signaling exacerbates inflammation and disturbs fibrotic repair in mouse myocardial infarction
10.1038/s41598-018-35194-w · 2018 · External reference
Distinct roles for non-muscle myosin II isoforms in mouse hepatic stellate cells
10.1016/j.jhep.2010.06.020 · 2011 · External reference
Elevated PRELP expression in heart and liver fibrosis promotes collagen production
10.1016/j.bbrc.2024.150785 · 2024 · External reference
Lumican, an extracellular matrix proteoglycan, is a novel requisite for hepatic fibrosis
10.1038/labinvest.2012.121 · 2012 · External reference
Collagen VI as a driver and disease biomarker in human fibrosis
10.1111/febs.16039 · 2022 · External reference
Microfibrillar-associated protein 4: A potential biomarker for screening for liver fibrosis in a mixed patient cohort
2015 · External reference
Extracellular matrix dynamics in hepatocarcinogenesis: A comparative proteomics study of PDGFC transgenic and Pten null mouse models
2011 · External reference
