Research graph
References from GPC: An expressive and tractable deep generative model for genetic variation data. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1002/9781119487845.ch5
10.1002/9781119487845.ch5 · External reference
Developments in coalescent theory from single loci to chromosomes
10.1016/j.tpb.2020.02.002 · 2020 · External reference
Genotype imputation for genome-wide association studies
10.1038/nrg2796 · 2010 · External reference
Haplotype phasing: existing methods and new developments
10.1038/nrg3054 · 2011 · External reference
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Generating samples under a Wright-Fisher neutral model of genetic variation
10.1093/bioinformatics/18.2.337 · 2002 · External reference
msHOT: modifying Hudson’s ms simulator to incorporate crossover and gene conversion hotspots
10.1093/bioinformatics/btl622 · 2007 · External reference
fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios
10.1093/bioinformatics/btr124 · 2011 · External reference
Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes
10.1371/journal.pcbi.1004842 · 2016 · External reference
Efficient ancestry and mutation simulation with msprime 1.0
2021 · External reference
Properties of a neutral allele model with intragenic recombination
10.1016/0040-5809(83)90013-8 · 1983 · External reference
Griffiths and Paul Marjoram. An Ancestral Recombination Graph.
1997 · External reference
Recombination as a point process along sequences
10.1006/tpbi.1998.1403 · 1999 · External reference
Approximating the coalescent with recombination
10.1098/rstb.2005.1673 · 2005 · External reference
Fast “coalescent” simulation
10.1186/1471-2156-7-16 · 2006 · External reference
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
10.1093/genetics/165.4.2213 · 2003 · External reference
An introduction to hidden Markov models
10.1109/massp.1986.1165342 · 1986 · External reference
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase
10.1086/502802 · 2006 · External reference
A linear complexity phasing method for thousands of genomes
10.1038/nmeth.1785 · 2011 · External reference
Fast and accurate genotype imputation in genome-wide association studies through pre-phasing
10.1038/ng.2354 · 2012 · External reference
Fast and accurate inference of local ancestry in latino populations
10.1093/bioinformatics/bts144 · 2012 · External reference
Sensitive detection of chromosomal segments of distinct ancestry in admixed populations
10.1371/journal.pgen.1000519 · 2009 · External reference
Visualizing population structure with variational autoencoders
10.1093/g3journal/jkaa036 · 2021 · External reference
Creating artificial human genomes using generative neural networks
10.1371/journal.pgen.1009303 · 2021 · External reference
Deep convolutional and conditional neural networks for large-scale genomic data generation
10.1371/journal.pcbi.1011584 · 2023 · External reference
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Interpreting generative adversarial networks to infer natural selection from genetic data
10.1093/genetics/iyae024 · 2024 · External reference
Genome-AC-GAN: Enhancing synthetic genotype generation through auxiliary classification
2024 · External reference
Autoencoders for genomic variation analysis
2026 · External reference
Generating realistic artificial human genomes using adversarial autoencoders
2025 · External reference
Generating synthetic genotypes using diffusion models
2025 · External reference
Genotype imputation using the Positional Burrows Wheeler Transform
10.1371/journal.pgen.1009049 · 2020 · External reference
A One-Penny Imputed Genome from Next-Generation Reference Panels
10.1016/j.ajhg.2018.07.015 · 2018 · External reference
Minimac2: faster genotype imputation
10.1093/bioinformatics/btu704 · 2014 · External reference
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Linkage disequilibrium in humans: models and data
10.1086/321275 · 2001 · External reference
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Approximating discrete probability distributions with dependence trees
10.1109/tit.1968.1054142 · 1968 · External reference
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A global reference for human genetic variation
10.1038/nature15393 · 2015 · External reference
The UK Biobank resource with deep phenotyping and genomic data
10.1038/s41586-018-0579-z · 2018 · External reference
High-coverage whole-genome sequencing of the expanded 1000 genomes project cohort including 602 trios
10.1016/j.cell.2022.08.004 · 2022 · External reference
Meta-imputation: An efficient method to combine genotype data after imputation with multiple reference panels
10.1016/j.ajhg.2022.04.002 · 2022 · External reference
Generation and evaluation of privacy preserving synthetic health data
10.1016/j.neucom.2019.12.136 · 2020 · External reference
10.1109/sp.2017.41
10.1109/sp.2017.41 · External reference
Resolving individuals contributing trace amounts of dna to highly complex mixtures using high-density snp genotyping microarrays
10.1371/journal.pgen.1000167 · 2008 · External reference
10.1145/2810103.2813677
10.1145/2810103.2813677 · External reference
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Generative adversarial nets
2014 · External reference
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Don’t explain without verifying veracity: An evaluation of explainable AI with video activity recognition
2020 · External reference
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On tractable computation of expected predictions
2019 · External reference
Certifying Fairness of Probabilistic Circuits
10.1609/aaai.v37i10.26447 · 2023 · External reference
Group Fairness by Probabilistic Modeling with Latent Fair Decisions
10.1609/aaai.v35i13.17431 · 2021 · External reference
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10.1109/iccvw.2011.6130310
10.1109/iccvw.2011.6130310 · External reference
Cutset Networks: A Simple, Tractable, and Scalable Approach for Improving the Accuracy of Chow-Liu Trees.
10.1007/978-3-662-44851-9_40 · 2014 · External reference
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