Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Privacy-aware community infrastructureResearch graph
References from Diversity of Salmonella enterica isolates from urban river and sewage water in Blantyre, Malawi. Local targets link to admitted publications; unresolved targets remain external evidence.
Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project
10.12688/wellcomeopenres.16291.2 · 2021 · External reference
Invasive Non-typhoidal Salmonella (iNTS) Infections
10.1093/cid/ciac035 · 2022 · External reference
Salmonella Establishment in Agricultural Soil and Colonization of Crop Plants Depend on Soil Type and Plant Species
10.3389/fmicb.2019.00967 · 2019 · External reference
Salmonella Biofilm Formation, Chronic Infection, and Immunity Within the Intestine and Hepatobiliary Tract
10.3389/fcimb.2020.624622 · 2021 · External reference
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings
10.1038/ng.3644 · 2016 · External reference
An African Salmonella Typhimurium ST313 sublineage with extensive drug-resistance and signatures of host adaptation
10.1038/s41467-019-11844-z · 2019 · External reference
A genomic appraisal of invasive Salmonella Typhimurium and associated antibiotic resistance in sub-Saharan Africa
10.1038/s41467-023-41152-6 · 2023 · External reference
The global burden of typhoid and paratyphoid fevers: a systematic analysis for the Global Burden of Disease Study 2017
10.1016/s1473-3099(18)30685-6 · 2019 · External reference
A Systematic Review of the Incidence, Risk Factors and Case Fatality Rates of Invasive Nontyphoidal Salmonella (iNTS) Disease in Africa (1966 to 2014)
2017 · External reference
The Typhoid Vaccine Acceleration Consortium (TyVAC): Vaccine effectiveness study designs: Accelerating the introduction of typhoid conjugate vaccines and reducing the global burden of enteric fever. Report from a meeting held on 26-27 October 2016, Oxford, UK
10.1016/j.vaccine.2017.08.001 · 2017 · External reference
Gavi’s balancing act: Accelerating access to vaccines while ensuring robust national decision-making for sustainable programmes
2015 · External reference
Best Practices of Blood Cultures in Low- and Middle-Income Countries
10.3389/fmed.2019.00131 · 2019 · External reference
Defining a research agenda for environmental wastewater surveillance of pathogens
10.1038/s41591-023-02457-7 · 2023 · External reference
Environmental surveillance for Salmonella Typhi as a tool to estimate the incidence of typhoid fever in low-income populations
10.12688/wellcomeopenres.17687.1 · 2023 · External reference
Environmental Surveillance for Salmonella Typhi and its Association With Typhoid Fever Incidence in India and Malawi
10.1093/infdis/jiad427 · 2024 · External reference
The sensitivity of real-time PCR amplification targeting invasive Salmonella serovars in biological specimens
10.1186/1471-2334-10-125 · 2010 · External reference
Real-Time PCR Assay for Differentiation of Typhoidal and Nontyphoidal Salmonella
10.1128/jcm.00167-19 · 2019 · External reference
Optimized methods for detecting Salmonella Typhi in the environment using validated field sampling, culture and confirmatory molecular approaches
10.1111/jam.15237 · 2022 · External reference
Evaluation of Sampling and Concentration Methods for Salmonella enterica Serovar Typhi Detection from Wastewater
10.4269/ajtmh.22-0427 · 2023 · External reference
Environmental surveillance for Salmonella Typhi in rivers and wastewater from an informal sewage network in Blantyre, Malawi
10.1371/journal.pntd.0012518 · 2024 · External reference
Domestic River Water Use and Risk of Typhoid Fever: Results From a Case-control Study in Blantyre, Malawi
10.1093/cid/ciz405 · 2020 · External reference
Spatial and Genomic Data to Characterize Endemic Typhoid Transmission
10.1093/cid/ciab745 · 2022 · External reference
Designation of Salmonella enterica sp. nov., nom. rev., as the Type and Only Species of the Genus Salmonella: Request for an Opinion
10.1099/00207713-37-4-465 · 1987 · External reference
Supplement 2002 (no. 46) to the Kauffmann-White scheme
10.1016/j.resmic.2004.04.005 · 2004 · External reference
Isolation and qPCR for S. Typhi detection from river water samples
2025 · External reference
Reviving the “Moore Swab”: a Classic Environmental Surveillance Tool Involving Filtration of Flowing Surface Water and Sewage Water To Recover Typhoidal Salmonella Bacteria
10.1128/aem.00060-20 · 2020 · External reference
Studies on the isolation of Bact. typhosum and Bact. paratyphosum B
1945 · External reference
Unresolved reference
2023 · External reference
Rapid identification of Salmonella enterica subsp. arizonae and S. enterica subsp. diarizonae by real-time polymerase chain reaction
10.1016/j.diagmicrobio.2009.03.022 · 2009 · External reference
The Genus Salmonella Lignières, 1900
10.1017/s0022172400034677 · 1934 · External reference
Comparative studies of methods of salmonella enrichment (author’s transl)
1975 · External reference
Unresolved reference
2007 · External reference
Unresolved reference
External reference
An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes
10.1186/s13059-021-02536-3 · 2021 · External reference
Trimmomatic: a flexible trimmer for Illumina sequence data
10.1093/bioinformatics/btu170 · 2014 · External reference
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
10.1089/cmb.2012.0021 · 2012 · External reference
Prokka: rapid prokaryotic genome annotation
10.1093/bioinformatics/btu153 · 2014 · External reference
Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data
2016 · External reference
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
10.1101/gr.186072.114 · 2015 · External reference
A genomic overview of the population structure of Salmonella
2018 · External reference
A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch
10.1038/s41467-021-23091-2 · 2021 · External reference
Unresolved reference
External reference
The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies
10.1371/journal.pone.0147101 · 2016 · External reference
Roary: rapid large-scale prokaryote pan genome analysis
10.1093/bioinformatics/btv421 · 2015 · External reference
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
2016 · External reference
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
10.1093/bioinformatics/btu033 · 2014 · External reference
Producing polished prokaryotic pangenomes with the Panaroo pipeline
10.1186/s13059-020-02090-4 · 2020 · External reference
The infinitely many genes model for the distributed genome of bacteria
10.1093/gbe/evs016 · 2012 · External reference
Using ggtree to Visualize Data on Tree-Like Structures
2020 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
10.1093/bioinformatics/bty633 · 2019 · External reference
Unresolved reference
2021 · External reference
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype
10.1101/gr.091017.109 · 2009 · External reference
Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways
10.1101/gr.077404.108 · 2008 · External reference
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
10.1093/nar/gkab301 · 2021 · External reference
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
10.1038/s41598-021-91456-0 · 2021 · External reference
Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa
10.1038/s41564-020-00836-1 · 2021 · External reference
Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa
10.1038/ng.2423 · 2012 · External reference
Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa
10.1186/s13073-017-0480-7 · 2017 · External reference
Salmonella enterica serovar Typhimurium ST313 sublineage 2.2 has emerged in Malawi with a characteristic gene expression signature and a fitness advantage
10.1093/femsml/uqae005 · 2024 · External reference
Invasive non-typhoidal salmonella disease: an emerging and neglected tropical disease in Africa
10.1016/s0140-6736(11)61752-2 · 2012 · External reference
Epidemics of invasive Salmonella enterica serovar enteritidis and S. enterica Serovar typhimurium infection associated with multidrug resistance among adults and children in Malawi
10.1086/529146 · 2008 · External reference
Genotypic homogeneity of multidrug resistant S. Typhimurium infecting distinct adult and childhood susceptibility groups in Blantyre, Malawi
10.1371/journal.pone.0042085 · 2012 · External reference
Rapid emergence of multidrug resistant, H58-lineage Salmonella typhi in Blantyre, Malawi
10.1371/journal.pntd.0003748 · 2015 · External reference
Typhoid fever
10.1056/nejmra020201 · 2002 · External reference
Case-control investigation of invasive Salmonella disease in Malawi reveals no evidence of environmental or animal transmission of invasive strains, and supports human to human transmission
10.1371/journal.pntd.0010982 · 2022 · External reference
Complete Genome Sequences of African Salmonella enterica Serovar Enteritidis Clinical Isolates Associated with Bloodstream Infection
10.1128/mra.01452-20 · 2021 · External reference
A multi-country Salmonella Enteritidis phage type 14b outbreak associated with eggs from a German producer: “near real-time” application of whole genome sequencing and food chain investigations, United Kingdom, May to September 2014
10.2807/1560-7917.es2015.20.16.21098 · 2015 · External reference
Prevalence and risk factors of Salmonella in commercial poultry farms in Nigeria
10.1371/journal.pone.0238190 · 2020 · External reference
Unresolved reference
2022 · External reference
The European Union One Health 2022 Zoonoses Report
2023 · External reference
Salmonella enterica subsp. enterica Serovar Heidelberg Food Isolates Associated with a Salmonellosis Outbreak Have Enhanced Stress Tolerance Capabilities
10.1128/aem.01065-19 · 2019 · External reference
First Detection of a Fosfomycin Resistance Gene, fosA7, in Salmonella enterica Serovar Heidelberg Isolated from Broiler Chickens
10.1128/aac.00410-17 · 2017 · External reference
Characterization of Escherichia coli and Salmonella from Victoria, Australia, Dairy Farm Environments
10.4315/0362-028x.jfp-17-044 · 2017 · External reference
