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References from Detection and genetic characterization of alphacoronaviruses in co-roosting bat species, southeastern Kenya. Local targets link to admitted publications; unresolved targets remain external evidence.
Identification of Alpha and Beta Coronavirus in Wildlife Species in France: Bats, Rodents, Rabbits, and Hedgehogs
10.3390/v9120364 · 2017 · External reference
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Epidemiology and cause of severe acute respiratory syndrome (SARS) in Guangdong, People’s Republic of China, in February, 2003
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Origin and evolution of pathogenic coronaviruses
10.1038/s41579-018-0118-9 · 2019 · External reference
MERS-CoV infection: Mind the public knowledge gap
10.1016/j.jiph.2017.05.003 · 2018 · External reference
Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia
10.1056/nejmoa1211721 · 2012 · External reference
Novel coronavirus: how things are in Wuhan
10.1016/j.cmi.2020.02.005 · 2020 · External reference
Unresolved reference
2012 · External reference
Discovery of seven novel Mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus
10.1128/jvi.06540-11 · 2012 · External reference
Evidence for an Ancestral Association of Human Coronavirus 229E with Bats
10.1128/jvi.01755-15 · 2015 · External reference
Link of a ubiquitous human coronavirus to dromedary camels
10.1073/pnas.1604472113 · 2016 · External reference
Recombination, reservoirs, and the modular spike: mechanisms of coronavirus cross-species transmission
10.1128/jvi.01394-09 · 2010 · External reference
Coronavirus Spike Protein and Tropism Changes
10.1016/bs.aivir.2016.08.004 · 2016 · External reference
Ecology, evolution and spillover of coronaviruses from bats
10.1038/s41579-021-00652-2 · 2022 · External reference
Unresolved reference
2018 · External reference
A high-resolution model of bat diversity and endemism for continental Africa
10.1016/j.ecolmodel.2015.09.009 · 2016 · External reference
Global hotspots and correlates of emerging zoonotic diseases
10.1038/s41467-017-00923-8 · 2017 · External reference
Roost selection by synanthropic bats in rural Kenya: implications for human-wildlife conflict and zoonotic pathogen spillover
10.1098/rsos.230578 · 2023 · External reference
Modern building structures are a landscape-level driver of bat–human exposure risk in Kenya
2024 · External reference
Frequent and intense human-bat interactions occur in buildings of rural Kenya
10.1371/journal.pntd.0011988 · 2024 · External reference
Serological evidence of bat SARS-related coronavirus infection in humans, China
10.1007/s12250-018-0012-7 · 2018 · External reference
Human-animal interactions and bat coronavirus spillover potential among rural residents in Southern China
10.1016/j.bsheal.2019.10.004 · 2019 · External reference
Keys to the bats (Mammalia: Chiroptera) of East Africa
2012 · External reference
Unresolved reference
2025 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Unresolved reference
2023 · External reference
Reproduction of Angola free-tailed bats (Tadarida condylura) and little free-tailed bats (Tadarida pumila) in Malawi (Central Africa) and elsewhere in Africa
10.1530/jrf.0.0850133 · 1989 · External reference
SYBR Green real-time reverse transcription-polymerase chain reaction assay for the generic detection of coronaviruses
10.1007/s00705-006-0840-x · 2007 · External reference
Generic detection of coronaviruses and differentiation at the prototype strain level by reverse transcription-PCR and nonfluorescent low-density microarray
10.1128/jcm.02426-06 · 2007 · External reference
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MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices
10.1016/j.ymeth.2016.02.020 · 2023 · External reference
SANSparallel: interactive homology search against Uniprot
10.1093/nar/gkv317 · 2015 · External reference
Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types
10.1093/ve/veaa091 · 2020 · External reference
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
2013 · External reference
HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences
10.1186/s12859-021-04294-2 · 2021 · External reference
The Sequence Alignment/Map format and SAMtools
10.1093/bioinformatics/btp352 · 2009 · External reference
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
10.1093/bioinformatics/btr509 · 2011 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
10.1093/molbev/mst010 · 2013 · External reference
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
10.1093/molbev/msaa015 · 2020 · External reference
ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates
10.1038/nmeth.4285 · 2017 · External reference
UFBoot2: Improving the Ultrafast Bootstrap Approximation
10.1093/molbev/msx281 · 2018 · External reference
Interactive tree of life (iTOL) v5: an online tool for phylogenetic tree display and annotation
10.1093/nar/gkab301 · 2021 · External reference
Metagenomic analysis reveals previously undescribed bat coronavirus strains in Eswatini
10.1007/s10393-021-01567-3 · 2021 · External reference
Genomic characterization of seven distinct bat coronaviruses in Kenya
10.1016/j.virusres.2012.04.007 · 2012 · External reference
Genomic characterization of Alphacoronavirus from Mops condylurus bats in Nigeria
10.1016/j.virusres.2023.199174 · 2023 · External reference
Global patterns in coronavirus diversity
10.1093/ve/vex012 · 2017 · External reference
A Novel Coronavirus and a Broad Range of Viruses in Kenyan Cave Bats
10.3390/v14122820 · 2022 · External reference
Origin and cross-species transmission of bat coronaviruses in China
10.1038/s41467-020-17687-3 · 2020 · External reference
Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses
10.1016/j.cell.2021.06.008 · 2021 · External reference
Viral Diversity of Microbats within the South West Botanical Province of Western Australia
10.3390/v11121157 · 2019 · External reference
Identification and characterization of novel alphacoronaviruses in Tadarida brasiliensis (Chiroptera, Molossidae) from Argentina: insights into recombination as a mechanism favoring bat coronavirus cross-species transmission
10.1128/spectrum.02047-23 · 2023 · External reference
Genomic characterizations of bat coronaviruses (1A, 1B and HKU8) and evidence for co-infections in Miniopterus bats
10.1099/vir.0.83605-0 · 2008 · External reference
Genetic diversity of coronaviruses in Miniopterus fuliginosus bats
10.1007/s11427-016-5039-0 · 2016 · External reference
Longitudinal monitoring in Cambodia suggests higher circulation of alpha and betacoronaviruses in juvenile and immature bats of three species
10.1038/s41598-021-03169-z · 2021 · External reference
Detection and characterization of diverse alpha- and betacoronaviruses from bats in China
10.1007/s12250-016-3727-3 · 2016 · External reference
Coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft
10.1007/s12250-016-3713-9 · 2016 · External reference
A real-time PCR assay for bat SARS-like coronavirus detection and its application to Italian greater horseshoe bat faecal sample surveys
10.1100/2012/989514 · 2012 · External reference
Genomic and serological detection of bat coronavirus from bats in the Philippines
10.1007/s00705-012-1410-z · 2012 · External reference
Detection of novel SARS-like and other coronaviruses in bats from Kenya
10.3201/eid1503.081013 · 2009 · External reference
Investigation of astrovirus, coronavirus and paramyxovirus co-infections in bats in the western Indian Ocean
2021 · External reference
Detection of new genetic variants of Betacoronaviruses in endemic frugivorous bats of Madagascar
10.1186/s12985-015-0271-y · 2015 · External reference
Seasonal shedding of coronavirus by straw-colored fruit bats at urban roosts in Africa
10.1371/journal.pone.0274490 · 2022 · External reference
Coronavirus surveillance in wildlife from two Congo basin countries detects RNA of multiple species circulating in bats and rodents
10.1371/journal.pone.0236971 · 2021 · External reference
Zoonotic host diversity increases in human-dominated ecosystems
10.1038/s41586-020-2562-8 · 2020 · External reference
Molossid bats in an African agro-ecosystem select sugarcane fields as foraging habitat
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Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin
10.1038/s41586-018-0010-9 · 2018 · External reference
Global patterns in coronavirus diversity
10.1093/ve/vex012 · 2017 · External reference
