Research graph
References from CLASV: Rapid Lassa virus lineage assignment with random forest. Local targets link to admitted publications; unresolved targets remain external evidence.
Unresolved reference
External reference
A prospective study of maternal and fetal outcome in acute Lassa fever infection during pregnancy
10.1136/bmj.297.6648.584 · 1988 · External reference
Lassa fever in pregnancy with a positive maternal and fetal outcome: A case report
10.1016/j.ijid.2019.08.023 · 2019 · External reference
The promise, problems, and pitfalls of including pregnant women in clinical trials of Lassa fever vaccine: a qualitative assessment of sub-Sahara Africa investigators’ perception
2022 · External reference
Unresolved reference
External reference
Fifty years of imported Lassa fever: a systematic review of primary and secondary cases
10.1093/jtm/taaa035 · 2020 · External reference
Laboratory Diagnosis and Molecular Epidemiological Characterization of the First Imported Case of Lassa Fever in China
2025 · External reference
Phylogeography of Lassa Virus in Nigeria
10.1128/jvi.00929-19 · 2019 · External reference
Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus
10.1016/j.cell.2015.07.020 · 2015 · External reference
Lassa virus isolates from Mali and the Ivory Coast represent an emerging fifth lineage
10.3389/fmicb.2015.01037 · 2015 · External reference
New Lineage of Lassa Virus, Togo, 2016
10.3201/eid2403.171905 · 2018 · External reference
Lassa fever in Benin: description of the 2014 and 2016 epidemics and genetic characterization of a new Lassa virus
10.1080/22221751.2020.1796528 · 2020 · External reference
New Hosts of The Lassa Virus
10.1038/srep25280 · 2016 · External reference
Neutralizing Antibodies against Lassa Virus Lineage I
2022 · External reference
Antibodies from Sierra Leonean and Nigerian Lassa fever survivors cross-react with recombinant proteins representing Lassa viruses of divergent lineages
10.1038/s41598-020-72539-w · 2020 · External reference
Humoral and cellular immune responses to Lassa fever virus in Lassa fever survivors and their exposed contacts in Southern Nigeria
10.1038/s41598-022-26045-w · 2022 · External reference
Pathogenesis of recent Lassa virus isolates from lineages II and VII in cynomolgus monkeys
10.1080/21505594.2022.2060170 · 2022 · External reference
Genome-wide association study identifies human genetic variants associated with fatal outcome from Lassa fever
10.1038/s41564-023-01589-3 · 2024 · External reference
Strengthening pathogen genomic surveillance for health emergencies: insights from the World Health Organization’s regional initiatives
10.3389/fpubh.2023.1146730 · 2023 · External reference
Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak
10.1126/science.aau9343 · 2019 · External reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
10.1038/s41467-019-10934-2 · 2019 · External reference
Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters
10.1101/gr.278623.123 · 2024 · External reference
Improved metagenomic analysis with Kraken 2
10.1186/s13059-019-1891-0 · 2019 · External reference
Nextclade: clade assignment, mutation calling and quality control for viral genomes
10.21105/joss.03773 · 2021 · External reference
Nextstrain: real-time tracking of pathogen evolution
10.1093/bioinformatics/bty407 · 2018 · External reference
Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic
10.1038/s41588-021-00862-7 · 2021 · External reference
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method
10.1093/ve/vead085 · 2024 · External reference
ViTAL: Vision TrAnsformer based Low coverage SARS-CoV-2 lineage assignment
10.1093/bioinformatics/btae093 · 2024 · External reference
Lassa fever - the road ahead
10.1038/s41579-022-00789-8 · 2023 · External reference
Structure and receptor recognition by the Lassa virus spike complex
10.1038/s41586-022-04429-2 · 2022 · External reference
Adaptive seeds tame genomic sequence comparison
10.1101/gr.113985.110 · 2011 · External reference
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
10.1093/nar/gkf436 · 2002 · External reference
AliView: a fast and lightweight alignment viewer and editor for large datasets
10.1093/bioinformatics/btu531 · 2014 · External reference
Data Structures for Statistical Computing in Python
10.25080/majora-92bf1922-00a · 2010 · External reference
Scikit-learn: machine learning in Python
2011 · External reference
Biopython: freely available Python tools for computational molecular biology and bioinformatics
10.1093/bioinformatics/btp163 · 2009 · External reference
Google Colaboratory
10.1007/978-1-4842-4470-8_7 · 2019 · External reference
Snakemake--a scalable bioinformatics workflow engine
10.1093/bioinformatics/bts480 · 2012 · External reference
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens
10.21105/joss.02906 · 2021 · External reference
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies
10.1093/molbev/msu300 · 2015 · External reference
TreeTime: Maximum-likelihood phylodynamic analysis
10.1093/ve/vex042 · 2018 · External reference
An Empirical Study of Learning from Imbalanced Data Using Random Forest
2007 · External reference
Circulation of Lassa virus across the endemic Edo-Ondo axis, Nigeria, with cross-species transmission between multimammate mice
10.1080/22221751.2023.2219350 · 2023 · External reference
Spatio-temporal spread of Lassa virus and a new rodent host in the Mano River Union area, West Africa
10.1080/22221751.2023.2290834 · 2024 · External reference
Building Pathogen Genomic Sequencing Capacity in Africa: Centre for Epidemic Response and Innovation Fellowship
10.3390/tropicalmed10040090 · 2025 · External reference
Genomic-informed pathogen surveillance in Africa: opportunities and challenges
10.1016/s1473-3099(20)30939-7 · 2021 · External reference
The African Society of Human Genetics successfully launches global data science workshops
10.1016/j.tig.2023.06.004 · 2023 · External reference
Building genomic capacity for precision health in Africa
10.1038/s41591-024-03081-9 · 2024 · External reference
Bridging the gap in African biodiversity genomics and bioinformatics
10.1038/s41587-023-01933-2 · 2023 · External reference
