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References from Genomic characterization of eight novel Bartonella species from bats and ectoparasites reveals phylogenetic diversity and host adaptation. Local targets link to admitted publications; unresolved targets remain external evidence.
Ecological fitness and strategies of adaptation of Bartonella species to their hosts and vectors
10.1051/vetres/2009011 · 2009 · External reference
Proposals to unify the genera Bartonella and Rochalimaea, with descriptions of Bartonella quintana comb. nov., Bartonella vinsonii comb. nov., Bartonella henselae comb. nov., and Bartonella elizabethae comb. nov., and to remove the family Bartonellaceae from the order Rickettsiales
10.1099/00207713-43-4-777 · 1993 · External reference
Strategy to detect and identify Bartonella species in routine clinical laboratory yields Bartonella henselae from human immunodeficiency virus-positive patient and unique Bartonella strain from his cat
10.1128/jcm.33.8.2107-2113.1995 · 1995 · External reference
Rochalimaea elizabethae sp. nov. isolated from a patient with endocarditis
10.1128/jcm.31.4.872-881.1993 · 1993 · External reference
Demonstration of Bartonella grahamii DNA in ocular fluids of a patient with neuroretinitis
10.1128/jcm.37.12.4034-4038.1999 · 1999 · External reference
Bartonella-host-cell interactions and vascular tumour formation
10.1038/nrmicro1209 · 2005 · External reference
Bartonella kosoyi sp. nov. and Bartonella krasnovii sp. nov., two novel species closely related to the zoonotic Bartonella elizabethae, isolated from black rats and wild desert rodent-fleas
10.1099/ijsem.0.003952 · 2020 · External reference
Bartonella jaculi sp. nov., Bartonella callosciuri sp. nov., Bartonella pachyuromydis sp. nov. and Bartonella acomydis sp. nov., isolated from wild Rodentia
10.1099/ijs.0.041939-0 · 2013 · External reference
Bats as reservoirs of severe emerging infectious diseases
10.1016/j.virusres.2015.05.006 · 2015 · External reference
Bats are key hosts in the radiation of mammal-associated Bartonella bacteria
10.1016/j.meegid.2021.104719 · 2021 · External reference
Bat-associated ticks as a potential link for vector-borne pathogen transmission between bats and other animals
10.1371/journal.pntd.0012584 · 2024 · External reference
Novel Bartonella species in insectivorous bats, Northern China
2017 · External reference
Bats and their ectoparasites (Nycteribiidae and Spinturnicidae) carry diverse novel Bartonella genotypes, China
2022 · External reference
Role of the spleen in Bartonella spp. infection
10.1111/j.1574-695x.2011.00908.x · 2012 · External reference
Genetic diversity of Bartonella species in small mammals in the Qaidam Basin, western China
10.1038/s41598-021-81508-w · 2021 · External reference
Association of unique, isolated treponemes with bovine digital dermatitis lesions
10.1128/jcm.01914-08 · 2009 · External reference
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies
10.1093/molbev/msu300 · 2015 · External reference
Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp
10.1002/imt2.107 · 2023 · External reference
fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Using SPAdes de novo assembler
10.1002/cpbi.102 · 2020 · External reference
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
10.1093/bioinformatics/btv351 · 2015 · External reference
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
10.1101/gr.186072.114 · 2015 · External reference
Prokka: rapid prokaryotic genome annotation
10.1093/bioinformatics/btu153 · 2014 · External reference
MAFFT-DASH: integrated protein sequence and structural alignment
2019 · External reference
OrthoFinder: phylogenetic orthology inference for comparative genomics
10.1186/s13059-019-1832-y · 2019 · External reference
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
10.1093/nar/gkae268 · 2024 · External reference
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
10.1099/ijs.0.64483-0 · 2007 · External reference
Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI
10.1099/ijsem.0.002809 · 2018 · External reference
TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes
2022 · External reference
Genome sequence-based species delimitation with confidence intervals and improved distance functions
10.1186/1471-2105-14-60 · 2013 · External reference
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
2016 · External reference
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
10.1093/nar/gky1085 · 2019 · External reference
Sensitive protein alignments at tree-of-life scale using diamond
10.1038/s41592-021-01101-x · 2021 · External reference
Roary: rapid large-scale prokaryote pan genome analysis
10.1093/bioinformatics/btv421 · 2015 · External reference
GFF utilities: GffRead and GffCompare
10.12688/f1000research.23297.1 · 2020 · External reference
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
10.1093/nar/gkl315 · 2006 · External reference
HyPhy: hypothesis testing using phylogenies
10.1093/bioinformatics/bti079 · 2005 · External reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
Unresolved reference
External reference
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
10.4161/fly.19695 · 2012 · External reference
Role of distinct type-IV-secretion systems and secreted effector sets in host adaptation by pathogenic Bartonella species
10.1111/cmi.13004 · 2019 · External reference
Primary structure of the hip gene of Escherichia coli and of its product, the beta subunit of integration host factor
10.1016/0022-2836(85)90206-2 · 1985 · External reference
Role of integration host factor in the transcriptional activation of flagellar gene expression in Caulobacter crescentus
10.1128/jb.187.3.949-960.2005 · 2005 · External reference
DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiation
10.1073/pnas.1212070110 · 2013 · External reference
Molecular detection of candidatus Bartonella mayotimonensis in North American bats
10.1089/vbz.2016.2080 · 2017 · External reference
Bats as reservoir hosts of human bacterial pathogen, Bartonella mayotimonensis
10.3201/eid2006.130956 · 2014 · External reference
Bartonella species, an emerging cause of blood-culture-negative endocarditis
10.1128/cmr.00013-17 · 2017 · External reference
Parallel evolution of a type IV secretion system in radiating lineages of the host-restricted bacterial pathogen Bartonella
10.1371/journal.pgen.1001296 · 2011 · External reference
The Trw type IV secretion system of Bartonella mediates host-specific adhesion to erythrocytes
10.1371/journal.ppat.1000946 · 2010 · External reference
Diversity and phylogenetic relationships among Bartonella strains from Thai bats
10.1371/journal.pone.0181696 · 2017 · External reference
Prevalence and genetic diversity of Bartonella Spp. in Northern Bats (Eptesicus nilssonii) and their blood-sucking Ectoparasites in Hokkaido, Japan
10.1007/s00248-021-01935-0 · 2023 · External reference
Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors
10.1038/ng.2007.38 · 2007 · External reference
Integration host factor (IHF) dictates the structure of polyamine-DNA condensates: implications for the role of IHF in the compaction of bacterial chromatin
10.1021/bi8019965 · 2009 · External reference
Mlc is a transcriptional activator with a key role in integrating cyclic AMP receptor protein and integration host factor regulation of leukotoxin RNA synthesis in Aggregatibacter actinomycetemcomitans
10.1128/jb.02144-12 · 2013 · External reference
Negative autogenous control of the master type iii secretion system regulator HrpL in Pseudomonas syringae
10.1128/mbio.02273-16 · 2017 · External reference
Positive regulation of Shigella flexneri virulence genes by integration host factor
10.1128/jb.179.21.6537-6550.1997 · 1997 · External reference
The integration host factor (IHF) integrates stationary-phase and virulence gene expression in Salmonella enterica serovar Typhimurium
10.1111/j.1365-2958.2006.05062.x · 2006 · External reference
Reciprocally rewiring and repositioning the Integration Host Factor (IHF) subunit genes in Salmonella enterica serovar Typhimurium: impacts on physiology and virulence
2022 · External reference
Integration host factor is involved in transcriptional regulation of the Brucella abortus virB operon
10.1111/j.1365-2958.2004.04316.x · 2004 · External reference
Integration host factor regulates colonization factors in the bee gut symbiont Frischella perrara
10.7554/elife.76182 · 2023 · External reference
