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References from The spread of pESI-mediated extended-spectrum cephalosporin resistance in Salmonella serovars—Infantis, Senftenberg, and Alachua isolated from food animal sources in the United States. Local targets link to admitted publications; unresolved targets remain external evidence.
Foodborne illness acquired in the United States—major pathogens
10.3201/eid1701.p11101 · 2011 · External reference
CTX-M-65 Extended-Spectrum beta-Lactamase-Producing Salmonella enterica Serotype Infantis, United States(1)
10.3201/eid2412.180500 · 2018 · External reference
Evolutionary Mechanisms Shaping the Maintenance of Antibiotic Resistance
10.1016/j.tim.2018.01.005 · 2018 · External reference
A unique megaplasmid contributes to stress tolerance and pathogenicity of an emergent Salmonella enterica serovar Infantis strain
10.1111/1462-2920.12351 · 2014 · External reference
Emergence of a Clonal Lineage of Multidrug-Resistant ESBL-Producing Salmonella Infantis Transmitted from Broilers and Broiler Meat to Humans in Italy between 2011 and 2014
10.1371/journal.pone.0144802 · 2015 · External reference
Characterization of a pESI-like plasmid and analysis of multidrug-resistant Salmonella enterica Infantis isolates in England and Wales
2021 · External reference
Salmonella enterica serovar Infantis from Food and Human Infections, Switzerland, 2010–2015: Poultry-Related Multidrug Resistant Clones and an Emerging ESBL Producing Clonal Lineage
10.3389/fmicb.2017.01322 · 2017 · External reference
Molecular Characterization of Salmonella Detected along the Broiler Production Chain in Trinidad and Tobago
2022 · External reference
Molecular epidemiology of Salmonella Infantis in Europe: insights into the success of the bacterial host and its parasitic pESI-like megaplasmid
2020 · External reference
Genetic Profiles and Antimicrobial Resistance Patterns of Salmonella Infantis Strains Isolated in Italy in the Food Chain of Broiler Meat Production
2020 · External reference
Mega-plasmid found worldwide confers multiple antimicrobial resistance in Salmonella Infantis of broiler origin in Russia
10.1016/j.ijfoodmicro.2019.108497 · 2020 · External reference
Carriage and Gene Content Variability of the pESI-Like Plasmid Associated with Salmonella Infantis Recently Established in United States Poultry Production
10.3390/genes11121516 · 2020 · External reference
A Multidrug-Resistant Salmonella Infantis Clone is Spreading and Recombining in the United States
10.1089/mdr.2020.0389 · 2021 · External reference
Third generation cephalosporin resistance in clinical non-typhoidal Salmonella enterica in Germany and emergence of bla (CTX-M)-harbouring pESI plasmids
2021 · External reference
Emergence of Multidrug-Resistant Salmonella enterica Subspecies enterica Serovar Infantis of Multilocus Sequence Type 2283 in German Broiler Farms
10.3389/fmicb.2020.01741 · 2020 · External reference
Whole-genome sequencing and phylogenetic analysis capture the emergence of a multi-drug resistant Salmonella enterica serovar Infantis clone from diagnostic animal samples in the United States
10.3389/fmicb.2023.1166908 · 2023 · External reference
mcr-1-Mediated Colistin Resistance and Genomic Characterization of Antimicrobial Resistance in ESBL-Producing Salmonella Infantis Strains from a Broiler Meat Production Chain in Italy
2022 · External reference
Corrigendum: Colistin Resistance Mediated by mcr-1 in ESBL-Producing, Multidrug Resistant Salmonella Infantis in Broiler Chicken Industry, Italy (2016–2017)
10.3389/fmicb.2018.02395 · 2018 · External reference
Increased Prevalence of Salmonella Infantis Isolated from Raw Chicken and Turkey Products in the United States Is Due to a Single Clonal Lineage Carrying the pESI Plasmid
10.3390/microorganisms10071478 · 2022 · External reference
Comparative Analysis of Extended-Spectrum-beta-Lactamase CTX-M-65-Producing Salmonella enterica Serovar Infantis Isolates from Humans, Food Animals, and Retail Chickens in the United States
10.1128/aac.00488-17 · 2017 · External reference
Horizontal Transfer of the Salmonella enterica Serovar Infantis Resistance and Virulence Plasmid pESI to the Gut Microbiota of Warm-Blooded Hosts
10.1128/mbio.01395-16 · 2016 · External reference
The emergence of a multidrug resistant Salmonella Muenchen in Israel is associated with horizontal acquisition of the epidemic pESI plasmid
2022 · External reference
Large-scale genomic analysis reveals the pESI-like megaplasmid presence in Salmonella Agona, Muenchen, Schwarzengrund, and Senftenberg
10.1016/j.fm.2022.104112 · 2022 · External reference
Evidence of structural rearrangements in ESBL-positive pESI(like) megaplasmids of S.Infantis
10.1093/femsle/fnad014 · 2023 · External reference
A practical exact maximum compatibility algorithm for reconstruction of recent evolutionary history
10.1186/s12859-017-1520-4 · 2017 · External reference
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
10.1038/s41598-021-91456-0 · 2021 · External reference
PlasmidFinder and In Silico pMLST: Identification and Typing of Plasmid Replicons in Whole-Genome Sequencing (WGS)
10.1007/978-1-4939-9877-7_20 · 2020 · External reference
Plasmid Composition, Antimicrobial Resistance and Virulence Genes Profiles of Ciprofloxacin- and Third-Generation Cephalosporin-Resistant Foodborne Salmonella enterica Isolates from Russia
10.3390/microorganisms11020347 · 2023 · External reference
Estimates of on-farm antimicrobial usage in broiler chicken production in the United States, 2013–2017
10.1111/zph.12764 · 2020 · External reference
YjdE (AdiC) is the arginine:agmatine antiporter essential for arginine-dependent acid resistance in Escherichia coli
10.1128/jb.185.15.4402-4409.2003 · 2003 · External reference
Characterization of IncI1 sequence type 71 epidemic plasmid lineage responsible for the recent dissemination of CTX-M-65 extended-spectrum beta-lactamase in the Bolivian Chaco region
10.1128/aac.00589-15 · 2015 · External reference
Detection of CTX-M-type beta-lactamase genes in fecal Escherichia coli isolates from healthy children in Bolivia and Peru
10.1128/aac.48.12.4556-4561.2004 · 2004 · External reference
Unresolved reference
External reference
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
10.1093/molbev/msp077 · 2009 · External reference
ggplot2: Elegant Graphics for Data Analysis
2009 · External reference
Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree
10.1093/molbev/msy194 · 2018 · External reference
Comparative Genomic Analysis of 450 Strains of Salmonellaenterica Isolated from Diseased Animals
10.3390/genes11091025 · 2020 · External reference
Long-Read Sequencing Reveals Evolution and Acquisition of Antimicrobial Resistance and Virulence Genes in Salmonella enterica
10.3389/fmicb.2021.777817 · 2021 · External reference
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation
10.1093/nar/gkaa1105 · 2021 · External reference
