References

Two P or Not Two P: Understanding Regulation by the Bacterial Second Messengers (p)ppGpp

10.1146/annurev-micro-042621-122343 · 2021 · External reference

Transcriptional Responses to ppGpp and DksA

10.1146/annurev-micro-090817-062444 · 2018 · External reference

ppGpp Binding to a Site at the RNAP-DksA Interface Accounts for Its Dramatic Effects on Transcription Initiation during the Stringent Response

10.1016/j.molcel.2016.04.029 · 2016 · External reference

Recent Advances and Current Trends in Nucleotide Second Messenger Signaling in Bacteria

10.1016/j.jmb.2019.01.014 · 2019 · External reference

Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase

10.1073/pnas.1819682116 · 2019 · External reference

DksA affects ppGpp induction of RpoS at a translational level

10.1128/jb.184.16.4455-4465.2002 · 2002 · External reference

Transcriptional and post-transcriptional modulation of SPI1 and SPI2 expression by ppGpp, RpoS and DksA in Salmonella enterica sv Typhimurium

2015 · External reference

DksA-HapR-RpoS axis regulates haemagglutinin protease production in Vibrio cholerae

2017 · External reference

Encystment and alkylresorcinol production by Azotobacter vinelandii strains impaired in poly-β-hydroxybutyrate synthesis

10.1007/s00203-003-0553-4 · 2003 · External reference

Transcriptional activation of the Azotobacter vinelandii polyhydroxybutyrate biosynthetic genes phbBAC by PhbR and RpoS

10.1099/mic.0.051649-0 · 2011 · External reference

Expression of the Azotobacter vinelandii Poly- ␤ -Hydroxybutyrate Biosynthetic phbBAC Operon Is Driven by Two Overlapping Promoters and Is Dependent on the Transcriptional Activator PhbR

10.1128/jb.184.20.5672-5677.2002 · 2002 · External reference

The regulation of poly β hydroxybutyrate metabolism in Azotobacter beijerinckii

10.1042/bj1340225 · 1973 · External reference

Inactivation of pycA, encoding pyruvate carboxylase activity, increases poly- β -hydroxybutyrate accumulation in Azotobacter vinelandii on solid medium

2004 · External reference

Roles of RpoS and PsrA in cyst formation and alkylresorcinol synthesis in Azotobacter vinelandii

10.1099/mic.0.046268-0 · 2011 · External reference

The Unphosphorylated EIIA Ntr Protein Represses the Synthesis of Alkylresorcinols in Azotobacter vinelandii. PLoS One

2015 · External reference

Absence of ppGpp Leads to Increased Mobilization of Intermediately Accumulated Poly(3-Hydroxybutyrate) in Ralstonia eutropha H16

2017 · External reference

Whole-genome microarray and gene deletion studies reveal regulation of the polyhydroxyalkanoate production cycle by the stringent response in Ralstonia eutropha H16

10.1128/aem.01693-12 · 2012 · External reference

Medium-chain-length polyhydroxyalkanoates synthesis by Pseudomonas putida KT2440 relA/spoT mutant: bioprocess characterization and transcriptome analysis

10.1186/s13568-017-0396-z · 2017 · External reference

Polyhydroxyalkanoate (PHA) polymer accumulation and pha gene expression in phenazine (phz-) and pyrrolnitrin (prn-) defective mutants of Pseudomonas chlororaphis PA23

10.3390/polym10111203 · 2018 · External reference

Pont G Du, Huerta-Saquero A, Merchant-Larios H, Servín-González L, Durán S. The Stringent Response Is Required for Amino Acid and Nitrate Utilization, Nod Factor Regulation, Nodulation, and Nitrogen Fixation in Rhizobium etli †

10.1128/jb.187.15.5075-5083.2005 · 2005 · External reference

DksA potentiates direct activation of amino acid promoters by ppGpp

10.1073/pnas.0501170102 · 2005 · External reference

DksA-dependent regulation of RpoS contributes to Borrelia burgdorferi tick-borne transmission and mammalian infectivity

10.1371/journal.ppat.1009072 · 2021 · External reference

The ancestral stringent response potentiator, DksA has been adapted throughout Salmonella evolution to orchestrate the expression of metabolic, motility, and virulence pathways

10.1080/19490976.2021.1997294 · 2022 · External reference

Transcriptomic Analysis Reveals Key Roles of (p) ppGpp and DksA in Regulating Metabolism and Chemotaxis in Yersinia enterocolitica

2023 · External reference

Stringent response regulators contribute to recovery from glucose phosphate stress in Escherichia coli

2017 · External reference

Transcriptome analysis reveals that the RNA polymerase-binding protein DksA1 has pleiotropic functions in Pseudomonas aeruginosa

10.1074/jbc.ra119.011692 · 2020 · External reference

DksA represses ribosomal gene transcription in Pseudomonas aeruginosa by interacting with RNA polymerase on ribosomal promoters

10.1111/j.1365-2958.2005.04597.x · 2005 · External reference

Studies on transformation of Escherichia coli with plasmids

10.1016/s0022-2836(83)80284-8 · 1983 · External reference

Genetic analysis of Azotobacter vinelandii mutant strains unable to fix nitrogen

10.1128/jb.130.2.954-956.1977 · 1977 · External reference

Improved antibiotic-resistance gene cassettes and omega elements for Escherichia coli vector construction and in vitro deletion/insertion mutagenesis

10.1016/0378-1119(95)00108-i · 1995 · External reference

Interposon mutagenesis of soil and water bacteria: a family of DNA fragments designed for in vitro insertional mutagenesis of Gram-negative bacteria

10.1016/0378-1119(87)90041-2 · 1987 · External reference

A small heat-shock protein (Hsp20) regulated by RpoS is essential for cyst desiccation resistance in Azotobacter vinelandii

2014 · External reference

The Azotobacter vinelandii alg8 and alg44 genes are essential for alginate synthesis and can be transcribed from an algD-independent promoter

10.1016/s0378-1119(97)00380-6 · 1997 · External reference

Excretion of ammonium by a nifL mutant of Azotobacter vinelandii fixing nitrogen

10.1128/aem.58.5.1711-1718.1992 · 1992 · External reference

β-glucuronidase (GUS) transposons for ecological and genetic studies of rhizobia and other gram-negative bacteria

10.1099/13500872-141-7-1691 · 1995 · External reference

Protein measurement with the Folin phenol reagent

10.1016/s0021-9258(19)52451-6 · 1951 · External reference

Image to ImageJ: 25 years of image analysis. Nature methods

10.1038/nmeth.2089 · 2012 · External reference

KEGG: kyoto encyclopedia of genes and genomes

10.1093/nar/28.1.27 · 2000 · External reference

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

10.1093/bioinformatics/btw313 · 2016 · External reference

Pathview: an R/Biocondutor package for pathway-based data integration and visualization

10.1093/bioinformatics/btt285 · 2013 · External reference

Changes in alginate molecwlar mass distributions, broth viscosity and morphology of Azotobacter vinelandii cultured in shake flasks

10.1007/s002530051088 · 1997 · External reference

Assay of poly-beta-hydroxybutyric acid

10.1128/jb.82.1.33-36.1961 · 1961 · External reference