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References from Effectiveness of stabilization methods for the immediate and short-term preservation of bovine fecal and upper respiratory tract genomic DNA. Local targets link to admitted publications; unresolved targets remain external evidence.
Microbiome-wide association studies link dynamic microbial consortia to disease
10.1038/nature18850 · 2016 · External reference
Host-associated microbiota of yellow stingrays (Urobatis jamaicensis) is shaped by their environment and life history.
10.1071/mf20107 · 2020 · External reference
The Gut Microbiota Modulates Energy Metabolism in the Hibernating Brown Bear Ursus arctos
10.1016/j.celrep.2016.01.026 · 2016 · External reference
Metagenomic analysis reveals the microbiome and resistome in migratory birds.
10.1186/s40168-019-0781-8 · 2020 · External reference
Effects of Respiratory Virus Vaccination and Bovine Respiratory Disease on the Respiratory Microbiome of Feedlot Cattle.
2023 · External reference
Whale-Associated Microbial Communities Remain Remarkably Stable despite Massive Water Community Disruption in a Managed Artificial Marine Environment.
10.3390/oceans3030020 · 2022 · External reference
More than an anthropogenic phenomenon: Antimicrobial resistance in ungulates from natural and agricultural environments
10.1016/j.scitotenv.2022.159789 · 2022 · External reference
Rules of Engagement: Epithelial-Microbe Interactions and Inflammatory Bowel Disease.
2021 · External reference
The Gut Barrier, Intestinal Microbiota, and Liver Disease: Molecular Mechanisms and Strategies to Manage.
10.3390/ijms21218351 · 2020 · External reference
Distal Consequences of Mucosal Infections in Intestinal and Lung Inflammation.
2022 · External reference
Ischemic Heart Disease in Patients with Inflammatory Bowel Disease: Risk Factors, Mechanisms and Prevention.
10.3390/life12081113 · 2022 · External reference
Mechanistic Insights into the Link between Gut Dysbiosis and Major Depression
2022 · External reference
Psychological Stress, Intestinal Barrier Dysfunctions, and Autoimmune Disorders: An Overview.
2020 · External reference
Intestinal barrier dysfunction in irritable bowel syndrome: a systematic review.
10.1177/1756284821993586 · 2021 · External reference
Gut-Lung Microbiota in Chronic Pulmonary Diseases: Evolution, Pathogenesis, and Therapeutics.
2021 · External reference
Gastrointestinal Dysfunction in Parkinson’s Disease: Current and Potential Therapeutics.
10.3390/jpm12020144 · 2022 · External reference
The Impact of Gut Microbiota-Derived Metabolites in Autism Spectrum Disorders.
10.3390/ijms221810052 · 2021 · External reference
Intestinal barrier dysfunction plays an integral role in arthritis pathology and can be targeted to ameliorate disease.
2021 · External reference
Not All Liver Abscesses Are Created Equal: The Impact of Tylosin and Antibiotic Alternatives on Bovine Liver Abscess Microbial Communities and a First Look at Bacteroidetes-Dominated Communities.
2022 · External reference
Bacteroidetes and Firmicutes Drive Differing Microbial Diversity and Community Composition Among Micro-Environments in the Bovine Rumen.
2022 · External reference
Does swab type matter? Comparing methods for Mannheimia haemolytica recovery and upper respiratory microbiome characterization in feedlot cattle.
10.1186/s42523-022-00197-6 · 2022 · External reference
Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems.
2019 · External reference
Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period.
2018 · External reference
Effects of Ceftiofur and Chlortetracycline on the Resistomes of Feedlot Cattle
10.1128/aem.00610-18 · 2018 · External reference
Feeding strategies to aid health, performance, and the gut microbiome in high-risk, newly received feedlot cattle.
2022 · External reference
Mycoplasma bovis is associated with Mannheimia haemolytica during acute bovine respiratory disease in feedlot cattle.
2022 · External reference
Bovine respiratory microbiota of feedlot cattle and its association with disease
10.1186/s13567-021-01020-x · 2022 · External reference
Antimicrobial Use on 36 Beef Feedlots in Western Canada: 2008–2012
2019 · External reference
Practical considerations for large-scale gut microbiome studies
10.1093/femsre/fux027 · 2017 · External reference
Comparison of Fecal Collection Methods for Microbiota Studies in Bangladesh
10.1128/aem.00361-17 · 2017 · External reference
Long-term taxonomic and functional stability of the gut microbiome from human fecal samples
10.1038/s41598-022-27033-w · 2023 · External reference
Comparison of Fecal Collection Methods on Variation in Gut Metagenomics and Untargeted Metabolomics.
10.1128/msphere.00636-21 · 2021 · External reference
Stabilization of swine faecal samples influences taxonomic and functional results in microbiome analyses.
10.1016/j.mex.2022.101716 · 2022 · External reference
An ambient temperature collection and stabilization strategy for canine microbiota studies.
10.1038/s41598-020-70232-6 · 2020 · External reference
Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies.
2016 · External reference
Methods for Improving Human Gut Microbiome Data by Reducing Variability through Sample Processing and Storage of Stool
10.1371/journal.pone.0134802 · 2015 · External reference
Unresolved reference
2013 · External reference
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
10.1038/s41587-019-0209-9 · 2019 · External reference
DADA2: High-resolution sample inference from Illumina amplicon data.
10.1038/nmeth.3869 · 2016 · External reference
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
10.1371/journal.pone.0061217 · 2013 · External reference
Differential abundance analysis for microbial marker-gene surveys.
10.1038/nmeth.2658 · 2013 · External reference
UniFrac: an effective distance metric for microbial community comparison.
10.1038/ismej.2010.133 · 2011 · External reference
Associating microbiome composition with environmental covariates using generalized UniFrac distances
10.1093/bioinformatics/bts342 · 2012 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Ward’s hierarchical agglomerative clustering method: which algorithms implement Ward’s criterion?
10.1007/s00357-014-9161-z · 2014 · External reference
Unresolved reference
2017 · External reference
Comparison of Collection Methods for Fecal Samples in Microbiome Studies
10.1093/aje/kww177 · 2017 · External reference
Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle
10.1038/s41598-017-12481-6 · 2017 · External reference
Administration of probiotic lactic acid bacteria to modulate fecal microbiome in feedlot cattle.
10.1038/s41598-022-16786-z · 2022 · External reference
Sample storage conditions induce post-collection biases in microbiome profiles
10.1186/s12866-018-1359-5 · 2018 · External reference
Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics.
2019 · External reference
A new tool for long-term studies of POM-bacteria interactions: overcoming the century-old Bottle Effect.
10.1038/srep14706 · 2015 · External reference
Sample storage conditions significantly influence faecal microbiome profiles.
10.1038/srep16350 · 2015 · External reference
