Research graph
References from Early assessment of fungal and oomycete pathogens in greenhouse irrigation water using Oxford nanopore amplicon sequencing. Local targets link to admitted publications; unresolved targets remain external evidence.
Smart greenhouses as the path towards precision agriculture in the food-energy and water nexus: case study of Qatar. Environ Syst Decis
2022 · External reference
Water, irrigation and plant diseases
2015 · External reference
Plant pathogens in recycled irrigation water in commercial plant nurseries and greenhouses: Their detection and management
10.1007/s00271-011-0285-1 · 2011 · External reference
Unresolved reference
2005 · External reference
Plant pathogens in irrigation water: Challenges and opportunities
10.1080/07352680591005838 · 2005 · External reference
Diversity of Phytophthora, Pythium, and Phytopythium Species in Recycled Irrigation Water in a Container Nursery
10.1094/pbiomes-10-18-0043-r · 2019 · External reference
The population of oomycetes in a recycled irrigation water system at a horticultural nursery in southern California
2020 · External reference
Major diseases of tomato, pepper and egg plant in green houses
2008 · External reference
To Recycle or Not to Recycle?
2006 · External reference
Sequencing and beyond: Integrating molecular “omics” for microbial community profiling
10.1038/nrmicro3451 · 2015 · External reference
A rapid and accurate minION-based workflow for tracking species biodiversity in the field
10.3390/genes10060468 · 2019 · External reference
Relative performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) thirdgeneration sequencing instruments in identification of agricultural and forest fungal pathogens
2019 · External reference
Diagnosis of plant diseases using the Nanopore sequencing platform
10.1111/ppa.12957 · 2019 · External reference
Zika and other virus genomes directly from clinical samples
2018 · External reference
Nanopore sequencing as a rapidly deployable Ebola outbreak tool
10.3201/eid2202.151796 · 2016 · External reference
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
10.1038/nprot.2017.066 · 2017 · External reference
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
2020 · External reference
Nanopore sequencing as a surveillance tool for plant pathogens in plant and insect tissues
10.1094/pdis-04-17-0488-re · 2018 · External reference
High-throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations
10.1111/1755-0998.12959 · 2019 · External reference
Sequencing DNA with nanopores: Troubles and biases
10.1371/journal.pone.0257521 · 2021 · External reference
Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction
2023 · External reference
Nanopore sequencing technology and its applications
10.1002/mco2.316 · 2023 · External reference
Diagnostic value of a nanopore sequencing assay of bronchoalveolar lavage fluid in pulmonary tuberculosis
2023 · External reference
Nanopore Sequencing for Mycobacterium tuberculosis : a Critical Review of the Literature, New Developments, and Future Opportunities
2022 · External reference
Metagenomic sequencing for detection and identification of the boxwood blight pathogen Calonectria pseudonaviculata
2022 · External reference
Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection
10.1146/annurev-pathmechdis-012418-012751 · 2019 · External reference
Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis
10.1038/s41467-018-05555-0 · 2018 · External reference
Use of synthetic DNA spike-in controls (sequins) for human genome sequencing
2019 · External reference
Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing
2017 · External reference
Unresolved reference
2021 · External reference
Freshwater monitoring by nanopore sequencing
10.7554/elife.61504 · 2021 · External reference
ANAQUIN: A software toolkit for the analysis of spike-in controls for next generation sequencing
10.1093/bioinformatics/btx038 · 2017 · External reference
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
10.1038/nbt.3601 · 2016 · External reference
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
10.1128/aem.01043-13 · 2013 · External reference
Synthetic spike-in standards for RNA-seq experiments
10.1101/gr.121095.111 · 2020 · External reference
ITS primers with enhanced specificity for basidiomycetes—application to the identification of mycorrhizae and rusts
10.1111/j.1365-294x.1993.tb00005.x · 1993 · External reference
Unresolved reference
1990 · External reference
Oomycete-specific ITS primers for identification and metabarcoding
10.3897/mycokeys.14.9244 · 2016 · External reference
Mycobiome diversity: high-throughput sequencing and identification of fungi
10.1038/s41579-018-0116-y · 2019 · External reference
Minimap2: Pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
Unresolved reference
External reference
ampvis2: an R package to analyse and visualise 16S rRNA amplicon data
2018 · External reference
Unresolved reference
2020 · External reference
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
10.1371/journal.pone.0061217 · 2013 · External reference
ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York
2009 · External reference
Relatedness of Strains of Fusarium oxysporum from Crucifers Measured by Examination of Mitochondrial and Ribosomal DNA
10.1094/phyto-77-1289 · 1987 · External reference
Evolution of the protists and protistan parasites from the perspective of molecular systematics
10.1016/s0020-7519(97)00181-1 · 1998 · External reference
The survival and treatment of fusarium oxysporum f. Sp. cubense in water
10.3390/jof7100796 · 2021 · External reference
Spike-in genomic DNA for validating performance of metagenomics workflows
10.2144/btn-2018-0089 · 2018 · External reference
Identifying biases and their potential solutions in human microbiome studies
2021 · External reference
Use of the ITS primers, ITS1F and ITS4, to characterize fungal abundance and diversity in mixed-template samples by qPCR and length heterogeneity analysis
10.1016/j.mimet.2007.06.016 · 2007 · External reference
Development of an assay for rapid detection and quantification of Verticillium dahliae in soil
10.1094/phyto-05-11-0130 · 2012 · External reference
Estimating and mitigating amplification bias in qualitative and quantitative arthropod metabarcoding
10.1038/s41598-017-17333-x · 2017 · External reference
The Overlooked Fact: Fundamental Need for Spike-In Control for Virtually All Genome-Wide Analyses
10.1128/mcb.00970-14 · 2016 · External reference
Using nanopore sequencing to identify fungi from clinical samples with high phylogenetic resolution
10.1038/s41598-023-37016-0 · 2023 · External reference
