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References from Computational investigation of cis-1,4-polyisoprene binding to the latex-clearing protein LcpK30. Local targets link to admitted publications; unresolved targets remain external evidence.
Bacterial and enzymatic degradation of poly(cis-1,4-isoprene) rubber: Novel biotechnological applications
10.1016/j.biotechadv.2020.107606 · 2020 · External reference
Enzymatic degradation of synthetic polyisoprenes: Via surfactant-free polymer emulsification
10.1039/d1gc03515k · 2021 · External reference
Rubber oxygenases
2018 · External reference
Enzymatic and Chemical Approaches for Post-Polymerization Modifications of Diene Rubbers: Current state and Perspectives
10.1002/mabi.202100261 · 2021 · External reference
LcpR VH2—regulating the expression of latex-clearing proteins in Gordonia polyisoprenivorans VH2
2019 · External reference
Latex Clearing Protein—an Oxygenase Cleaving Poly (cis -1,4-Isoprene) Rubber at the cis Double Bonds
10.1128/aem.01502-14 · 2014 · External reference
Biochemical and spectroscopic characterization of purified Latex Clearing Protein (Lcp) from newly isolated rubber degrading Rhodococcus rhodochrous strain RPK1 reveals novel properties of Lcp
10.1186/s12866-016-0703-x · 2016 · External reference
Rubber Oxygenase and Latex Clearing Protein Cleave Rubber to Different Products and Use Different Cleavage Mechanisms
10.1128/aem.01271-14 · 2014 · External reference
Characterization and functional expression of a rubber degradation gene of a Nocardia degrader from a rubber-processing factory
10.1016/j.jbiosc.2016.11.012 · 2017 · External reference
Structural and Functional Analysis of Latex Clearing Protein (Lcp) Provides Insight into the Enzymatic Cleavage of Rubber
10.1038/s41598-017-05268-2 · 2017 · External reference
Assays for the Detection of Rubber Oxygenase Activities
10.21769/bioprotoc.2188 · 2017 · External reference
Cleavage of Rubber by the Latex Clearing Protein (Lcp) of Streptomyces sp. Strain K30: Molecular Insights
10.1128/aem.02176-16 · 2016 · External reference
Latex Clearing Protein (Lcp) of Streptomyces sp. Strain K30 Is a b -Type Cytochrome and Differs from Rubber Oxygenase A (RoxA) in Its Biophysical Properties
10.1128/aem.00275-15 · 2015 · External reference
In vitro studies on the degradation of poly(cis-1,4-isoprene)
10.1002/btpr.2631 · 2018 · External reference
Production of functionalized oligo-isoprenoids by enzymatic cleavage of rubber
10.1111/1751-7915.12748 · 2017 · External reference
Mechanical Insights into the Enzymatic Cleavage of Double C-C Bond in Poly(cis-1,4-isoprene) by the Latex Clearing Protein
2020 · External reference
Structural insight into molecular mechanism of poly(ethylene terephthalate) degradation
2018 · External reference
Insights from semi-oriented EPR spectroscopy studies into the interaction of lytic polysaccharide monooxygenases with cellulose
10.1039/c9dt04065j · 2020 · External reference
CAVER 3.0: A tool for the analysis of transport pathways in dynamic protein structures
10.1371/journal.pcbi.1002708 · 2012 · External reference
Computational analysis of protein tunnels and channels
10.1007/978-1-4939-7366-8_3 · 2018 · External reference
Protein–peptide docking: opportunities and challenges
10.1016/j.drudis.2018.05.006 · 2018 · External reference
Molecular dynamics modeling the synthetic and biological polymers interactions pre-studied via docking: Anchors modified polyanions interference with the HIV-1 fusion mediator
10.1007/s10822-014-9749-8 · 2014 · External reference
Relationship between particle size and molecular weight of rubber from hevea brasiliensis
10.5254/1.3547907 · 2005 · External reference
Pose prediction and virtual screening performance of GOLD scoring functions in a standardized test
10.1007/s10822-012-9551-4 · 2012 · External reference
Ligand binding affinities from MD simulations
10.1021/ar010014p · 2002 · External reference
The MM/PBSA and MM/GBSA methods to estimate ligand-binding affinities
2015 · External reference
Impact of the access tunnel engineering on catalysis is strictly ligand-specific
10.1111/febs.14418 · 2018 · External reference
Engineering enzyme access tunnels
10.1016/j.biotechadv.2019.04.008 · 2019 · External reference
Tunnel engineering to accelerate product release for better biomass-degrading abilities in lignocellulolytic enzymes
2019 · External reference
Influence of the method of hydrogen atoms incorporation into the target protein on the protein-ligand binding energy
2017 · External reference
CAVER Analyst 2.0: Analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories
10.1093/bioinformatics/bty386 · 2018 · External reference
Fpocket: An open source platform for ligand pocket detection
10.1186/1471-2105-10-168 · 2009 · External reference
MDpocket: Open-source cavity detection and characterization on molecular dynamics trajectories
10.1093/bioinformatics/btr550 · 2011 · External reference
Survey of the scoring functions for protein-ligand docking
2019 · External reference
H++ 3.0: Automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations
10.1093/nar/gks375 · 2012 · External reference
PLIP 2021: Expanding the scope of the protein-ligand interaction profiler to DNA and RNA
10.1093/nar/gkab294 · 2021 · External reference
Ff19SB: Amino-Acid-Specific Protein Backbone Parameters Trained against Quantum Mechanics Energy Surfaces in Solution
10.1021/acs.jctc.9b00591 · 2020 · External reference
MCPB.py: A Python Based Metal Center Parameter Builder
10.1021/acs.jcim.5b00674 · 2016 · External reference
Unresolved reference
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Development and testing of a general Amber force field
10.1002/jcc.20035 · 2004 · External reference
Automatic atom type and bond type perception in molecular mechanical calculations
10.1016/j.jmgm.2005.12.005 · 2006 · External reference
Systematic parameterization of monovalent ions employing the nonbonded model
10.1021/ct500918t · 2015 · External reference
Unresolved reference
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Unresolved reference
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Sartorius products
1996 · External reference
