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References from Copy number variant scan in more than four thousand Holstein cows bred in Lombardy, Italy. Local targets link to admitted publications; unresolved targets remain external evidence.
Animal domestication in the era of ancient genomics
10.1038/s41576-020-0225-0 · 2020 · External reference
Invited review: overview of new traits and phenotyping strategies in dairy cattle with a focus on functional traits.
10.1017/s1751731114002614 · 2015 · External reference
Prediction of total genetic value using genome-wide dense marker maps
10.1093/genetics/157.4.1819 · 2001 · External reference
Genomic selection in dairy cattle: the USDA experience.
10.1146/annurev-animal-021815-111422 · 2017 · External reference
Copy number variation detection via high-density SNP genotyping.
10.1101/pdb.top46 · 2008 · External reference
Relative impact of nucleotide and copy number variation on gene expression phenotypes
10.1126/science.1136678 · 2007 · External reference
DNA copy number variation and gene expression analyses reveal the implication of specific oncogenes and genes in GBM.
10.1080/07357900802563044 · 2009 · External reference
Mapping copy number variation by population-scale genome sequencing
10.1038/nature09708 · 2011 · External reference
Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens.
10.1371/journal.pgen.1000512 · 2009 · External reference
A novel unstable duplication upstream of HAS2 predisposes to a breed-defining skin phenotype and a periodic fever syndrome in Chinese Shar-Pei dogs.
10.1371/journal.pgen.1001332 · 2011 · External reference
SOX9 duplication linked to intersex in deer.
10.1371/journal.pone.0073734 · 2013 · External reference
Ectopic KIT copy number variation underlies impaired migration of primordial germ cells associated with gonadal hypoplasia in cattle (Bos taurus).
10.1371/journal.pone.0075659 · 2013 · External reference
A structural variant in the 5’-flanking region of the TWIST2 gene affects melanocyte development in belted cattle
10.1371/journal.pone.0180170 · 2017 · External reference
Genetic diversity of seven cattle breeds inferred using copy number variations.
10.3389/fgene.2018.00163 · 2018 · External reference
Population-genetic properties of differentiated copy number variations in cattle.
10.1038/srep23161 · 2016 · External reference
Diet adaptation in dog reflects spread of prehistoric agriculture
10.1038/hdy.2016.48 · 2016 · External reference
Diet and the evolution of human amylase gene copy number variation
10.1038/ng2123 · 2007 · External reference
Analysis of copy number variations in Holstein cows identify potential mechanisms contributing to differences in residual feed intake
10.1007/s10142-012-0295-y · 2012 · External reference
Fine Mapping of a QTL for Fertility on BTA7 and Its Association With a CNV in the Israeli Holsteins.
10.1534/g3.111.000299 · 2011 · External reference
Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins
2014 · External reference
Genome-wide association study for milk somatic cell score in holstein cattle using copy number variation as markers
10.1111/jbg.12238 · 2017 · External reference
Genomic predictions combining SNP markers and copy number variations in Nellore cattle
2018 · External reference
Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
10.1038/nbt.1852 · 2011 · External reference
Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms
10.1093/nar/gkn556 · 2008 · External reference
10.1007/978-3-319-24277-4_9
10.1007/978-3-319-24277-4_9 · External reference
BEDTools: a flexible suite of utilities for comparing genomic features
10.1093/bioinformatics/btq033 · 2010 · External reference
HandyCNV: Standardized Summary, Annotation, Comparison, and Visualization of Copy Number Variant, Copy Number Variation Region, and Runs of Homozygosity.
10.3389/fgene.2021.731355 · 2021 · External reference
Cytoscape: a software environment for integrated models of biomolecular interaction networks
10.1101/gr.1239303 · 2003 · External reference
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
10.1093/bioinformatics/btp101 · 2009 · External reference
High confidence copy number variants identified in Holstein dairy cattle from whole genome sequence and genotype array data
2020 · External reference
Functional and population genetic features of copy number variations in two dairy cattle populations
10.1186/s12864-020-6496-1 · 2020 · External reference
A genome wide association study between CNVs and quantitative traits in Brown Swiss cattle.
2017 · External reference
A copy number variant scan in the autochthonous Valdostana Red Pied cattle breed and comparison with specialized dairy populations.
10.1371/journal.pone.0204669 · 2018 · External reference
Genome-wide elucidation of CNV regions and their association with production and reproduction traits in composite Vrindavani cattle
10.1016/j.gene.2022.146510 · 2022 · External reference
Associated effects of copy number variants on economically important traits in Spanish Holstein dairy cattle.
10.3168/jds.2015-10487 · 2016 · External reference
Genomic characteristics of cattle copy number variations
2011 · External reference
A genome-wide scan of copy number variants using high-density SNPs in Brown Swiss dairy cattle.
2016 · External reference
Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins
10.1186/1471-2164-14-131 · 2013 · External reference
Comparative analysis of CNV calling algorithms: literature survey and a case study using bovine high-density SNP data.
10.3390/microarrays2030171 · 2013 · External reference
Genomic approach to manage genetic variability in dairy farms
10.1080/1828051x.2023.2243977 · 2023 · External reference
Genome-wide association study for semen production traits in Holstein-Friesian bulls
10.3168/jds.2014-8951 · 2015 · External reference
The genetic background of clinical mastitis in Holstein-Friesian cattle.
10.1017/s1751731119000338 · 2019 · External reference
A 12 kb multi-allelic copy number variation encompassing a GC gene enhancer is associated with mastitis resistance in dairy cattle
10.1371/journal.pgen.1009331 · 2021 · External reference
Cross talk between eIF2α and eEF2 phosphorylation pathways optimizes translational arrest in response to oxidative stress.
10.1016/j.isci.2019.09.031 · 2019 · External reference
A mutation in POLR3E impairs antiviral immune response and RNA polymerase III
10.1073/pnas.2009947117 · 2020 · External reference
Neuropilin-1 and neuropilin-2 are differentially expressed in human proteinuric nephropathies and cytokine-stimulated proximal tubular cells
10.1038/labinvest.2009.96 · 2009 · External reference
Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle
10.1186/s12863-017-0493-7 · 2017 · External reference
High-resolution copy-number variation map reflects human olfactory receptor diversity and evolution
10.1371/journal.pgen.1000249 · 2008 · External reference
The essence of appetite: does olfactory receptor variation play a role?
10.1093/jas/sky068 · 2018 · External reference
Signal regulatory proteins in the immune system
10.4049/jimmunol.175.12.7781 · 2005 · External reference
A genome-wide association study for clinical mastitis in first parity US Holstein cows using single-step approach and genomic matrix re-weighting procedure
10.1371/journal.pone.0114919 · 2015 · External reference
Heat stress and immune response phenotype affect DNA methylation in blood mononuclear cells from Holstein dairy cows
10.1038/s41598-021-89951-5 · 2021 · External reference