Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Privacy-aware community infrastructureResearch graph
References from Reclassification of Botryococcus braunii chemical races into separate species based on a comparative genomics analysis. Local targets link to admitted publications; unresolved targets remain external evidence.
Botryococcus braunii: A renewable source of hydrocarbons and other chemicals
10.1080/07388550290789513 · 2002 · External reference
Botryococcus braunii: a rich source for hydrocarbons and related ether lipids
10.1007/s00253-004-1779-z · 2005 · External reference
Hydrocracking of the Oils of Botryococcus braunii to Transport Fuels
10.1002/bit.260240116 · 1982 · External reference
The production of bio-jet fuel from Botryococcus braunii liquid over a Ru/CeO2 catalyst.
10.1039/c6ra22517a · 2016 · External reference
Potential synergies of drop‐in biofuel production with further co‐processing at oil refineries.
10.1002/bbb.1974 · 2019 · External reference
Hydrocarbon content and its relationship to physiological state in the green alga Botryococcus braunii
10.1016/s0031-9422(00)85397-2 · 1969 · External reference
Hydrocarbons of Geochemical Significance in Microscopic Algae
10.1016/s0031-9422(00)85700-3 · 1970 · External reference
Lycopadiene, a tetraterpenoid hydrocarbon from new strains of the green alga Botryococcus braunii
10.1016/s0040-4039(00)96423-2 · 1987 · External reference
Relationship between hydrocarbons and molecular phylogeny of Botryococcus braunii.
10.1016/j.algal.2012.05.003 · 2012 · External reference
The biosynthesis of long-chain hydrocarbons in the green alga Botryococcus braunii
10.1016/0031-9422(80)83060-3 · 1980 · External reference
Mechanism of non-isoprenoid hydrocarbon biosynthesis in Botryococcus braunii
10.1016/s0031-9422(00)82602-3 · 1984 · External reference
Botryococcene distribution in strains of the green alga Botryococcus braunii
10.1016/0031-9422(88)80199-7 · 1988 · External reference
Biosynthesis of n-alkatrienes in Botryococcus braunii
10.1016/0031-9422(91)83616-s · 1991 · External reference
Polyacetals based on polymethylsqualene diols, precursors of algaenan in Botryococcus braunii race B
10.1016/j.orggeochem.2006.12.003 · 2007 · External reference
Braunicetals: acetals from condensation of macrocyclic aldehydes and terpene diols in Botryococcus braunii
10.1016/j.phytochem.2008.06.004 · 2008 · External reference
Phylogenetic Placement, Genome Size, and Gc Content of the Liquid-Hydrocarbon-Producing Green Microalga Botryococcus braunii Strain Berkeley (Showa) (Chlorophyta).
10.1111/j.1529-8817.2010.00820.x · 2010 · External reference
Genome size and phylogenetic analysis of the A and L races of Botryococcus braunii
10.1007/s10811-010-9586-7 · 2011 · External reference
A squalene synthase-like enzyme initiates production of tetraterpenoid hydrocarbons in Botryococcus braunii Race L
10.1038/ncomms11198 · 2016 · External reference
Polysaccharide associated protein (PSAP) from the green microalga Botryococcus braunii is a unique extracellular matrix hydroxyproline-rich glycoprotein.
10.1016/j.algal.2017.11.018 · 2018 · External reference
Detection of the oil-producing microalga Botryococcus braunii in natural freshwater environments by targeting the hydrocarbon biosynthesis gene SSL-3.
10.1038/s41598-019-53619-y · 2019 · External reference
Structure of the polysaccharide sheath from the B race of the green microalga Botryococcus braunii
10.1016/j.algal.2021.102252 · 2021 · External reference
Characterization of botryococcene synthase enzyme activity, a squalene synthase-like activity from the green microalga Botryococcus braunii, Race B
10.1016/j.abb.2003.12.004 · 2004 · External reference
BoCAPS: Rapid screening of chemical races in Botryococcus braunii with direct PCR-CAPS.
10.1016/j.algal.2022.102789 · 2022 · External reference
A species definition for the modern synthesis
10.1016/0169-5347(95)90031-4 · 1995 · External reference
Meiosis in Spirogyra (Chlorophyceae).
1984 · External reference
Unresolved reference
2014 · External reference
The mating-type locus of Chlamydomonas reinhardtii contains highly rearranged DNA sequences
10.1016/0092-8674(94)90389-1 · 1994 · External reference
A sex recognition glycoprotein is encoded by the plus mating-type gene fus1 of Chlamydomonas reinhardtii
10.1091/mbc.7.8.1235 · 1996 · External reference
Rapid evolution of sex-related genes in Chlamydomonas
10.1073/pnas.94.16.8634 · 1997 · External reference
Evolution of an expanded sex-determining locus in Volvox
10.1126/science.1186222 · 2010 · External reference
A supergene underlies linked variation in color and morphology in a Holarctic songbird.
10.1038/s41467-021-27173-z · 2021 · External reference
Whole-genome assembly of Akkermansia muciniphila sequenced directly from human stool.
10.1186/s13062-015-0041-1 · 2015 · External reference
Microvirga massiliensis sp. nov., the human commensal with the largest genome
10.1002/mbo3.329 · 2016 · External reference
Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa).
10.1128/genomea.00215-17 · 2017 · External reference
Method for isolation of high molecular weight genomic DNA from Botryococcus biomass
2024 · External reference
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions
10.1126/science.1143609 · 2007 · External reference
The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation
10.1186/gb-2012-13-5-r39 · 2012 · External reference
The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex
10.1105/tpc.110.076406 · 2010 · External reference
PhycoCosm, a comparative algal genomics resource
10.1093/nar/gkaa898 · 2021 · External reference
Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Dunaliella salina Strain CCAP19/18.
2017 · External reference
Development of a high-productivity, halophilic, thermotolerant microalga Picochlorum renovo
2019 · External reference
Genome of the halotolerant green alga Picochlorum sp. reveals strategies for thriving under fluctuating environmental conditions
10.1111/1462-2920.12541 · 2015 · External reference
The unexpected extremophile: Tolerance to fluctuating salinity in the green alga Picochlorum.
10.1016/j.algal.2016.04.003 · 2016 · External reference
Genomic Analysis of Picochlorum Species Reveals How Microalgae May Adapt to Variable Environments
2018 · External reference
High-light selection produces a fast-growing Picochlorum celeri.
10.1016/j.algal.2018.09.024 · 2018 · External reference
Unresolved reference
2015 · External reference
Unresolved reference
2015 · External reference
Tandem repeats finder: a program to analyze DNA sequences
10.1093/nar/27.2.573 · 1999 · External reference
Combining Data in Phylogenetic Systematics: An Empirical Approach Using Three Molecular Data Sets in the Solanaceae
10.1093/sysbio/43.4.467 · 1994 · External reference
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs
10.1093/nar/gky1053 · 2019 · External reference
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
10.1186/s13059-015-0721-2 · 2015 · External reference
UpSet: Visualization of Intersecting Sets
10.1109/tvcg.2014.2346248 · 2014 · External reference
Lineage-Specific Genes and Family Expansions in Dictyostelid Genomes Display Expression Bias and Evolutionary Diversification during Development
10.3390/genes12101628 · 2021 · External reference
Distinguishing Homologous from Analogous Proteins.
1970 · External reference
Homology: a personal view on some of the problems
10.1016/s0168-9525(00)02005-9 · 2000 · External reference
One thousand plant transcriptomes and the phylogenomics of green plants
10.1038/s41586-019-1693-2 · 2019 · External reference
Turning a hobby into a job: How duplicated genes find new functions
10.1038/nrg2482 · 2008 · External reference
Fractionation and subfunctionalization following genome duplications: mechanisms that drive gene content and their consequences.
10.1016/j.gde.2015.11.002 · 2015 · External reference
Polyploidy and genome evolution in plants.
10.1016/j.gde.2015.11.003 · 2015 · External reference
Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees
10.1093/bioinformatics/bts386 · 2012 · External reference
Retained duplicate genes in green alga Chlamydomonas reinhardtii tend to be stress responsive and experience frequent response gains
10.1186/s12864-015-1335-5 · 2015 · External reference
Alkadiene- and botryococcene-producing races of wild strains of Botryococcus braunii
10.1016/s0031-9422(00)83032-0 · 1985 · External reference
Extending the story of very-long-chain fatty acid elongation
10.1016/j.plantsci.2013.05.008 · 2013 · External reference
Acyl-CoA elongase from a higher plant (Lunaria annua): metabolic intermediates of very-long-chain acyl-CoA products and substrate specificity.
10.1016/0005-2760(91)90198-q · 1991 · External reference
Isolation and characterization of a gene affecting fatty acid elongation in Saccharomyces cerevisiae
10.1074/jbc.271.31.18413 · 1996 · External reference
The VLCFA elongase gene family in Arabidopsis thaliana: phylogenetic analysis, 3D modelling and expression profiling
10.1007/s11103-008-9339-z · 2008 · External reference
Very-long-chain fatty acid biosynthesis is controlled through the expression and specificity of the condensing enzyme
10.1046/j.1365-313x.1997.12010121.x · 1997 · External reference
Fatty acid elongases in mammals: their regulation and roles in metabolism
10.1016/j.plipres.2006.01.004 · 2006 · External reference
Conservation between human and fungal squalene synthetases: similarities in structure, function, and regulation
1993 · External reference
Yeast squalene synthase: expression, purification, and characterization of soluble recombinant enzyme
10.1006/abbi.1993.1331 · 1993 · External reference
Molecular Characterization of Tobacco Squalene Synthase and Regulation in Response to Fungal Elicitor
10.1006/abbi.1997.0463 · 1998 · External reference
Molecular cloning and characterization of two cDNAs for Glycyrrhiza glabra squalene synthase
10.1248/bpb.22.947 · 1999 · External reference
Arabidopsis thaliana contains a single gene encoding squalene synthase
10.1007/s11103-008-9299-3 · 2008 · External reference
Molecular characterization of Glycine max squalene synthase genes in seed phytosterol biosynthesis
10.1016/j.plaphy.2013.07.018 · 2013 · External reference
Functional characterization of squalene synthase and squalene epoxidase in Taraxacum koksaghyz.
10.1002/pld3.63 · 2018 · External reference
10.1016/b978-0-08-091283-7.00119-3
10.1016/b978-0-08-091283-7.00119-3 · 1999 · External reference
Molecular Characterization of Squalene Synthase from the Green Microalga Botryococcus braunii, Race B
10.1006/abbi.1999.1568 · 2000 · External reference
Identification of unique mechanisms for triterpene biosynthesis in Botryococcus braunii
10.1073/pnas.1106222108 · 2011 · External reference
Meiotic genes and sexual reproduction in the green algal class Trebouxiophyceae (Chlorophyta).
10.1111/jpy.12293 · 2015 · External reference
Unresolved reference
2005 · External reference
Genetic similarity among Arabidopsis thaliana ecotypes estimated by DNA sequence comparison
10.1007/bf00020488 · 1996 · External reference
Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy
10.1105/tpc.106.041665 · 2006 · External reference
Genome-Wide Comparative Analysis of Miniature Inverted Repeat Transposable Elements in 19 Arabidopsis thaliana Ecotype Accessions.
10.1038/s41598-017-02855-1 · 2017 · External reference
Genome scale transcriptional response diversity among ten ecotypes of Arabidopsis thaliana during heat stress
2013 · External reference
Species algarum.
10.5962/bhl.title.60464 · 1849 · External reference
AlgaeBase.
2023 · External reference
Unresolved reference
2018 · External reference
The Botryococcenes-hydrocarbons of novel structure from the alga Botryococcus braunii
10.1016/s0031-9422(00)85672-1 · 1968 · External reference
Transposable elements and genome size variations in plants
10.5808/gi.2014.12.3.87 · 2014 · External reference
Genome Size Variation and Evolution Driven by Transposable Elements in the Genus Oryza.
2022 · External reference
Comparative genomics of Chlamydomonas
10.1093/plcell/koab026 · 2021 · External reference
Transposable element distribution, abundance and role in genome size variation in the genus Oryza
10.1186/1471-2148-7-152 · 2007 · External reference
Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata
10.1073/pnas.1018222108 · 2011 · External reference
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
10.1126/science.abg5289 · 2021 · External reference
Palaeogenomics of the Hydrocarbon Producing Microalga Botryococcus braunii.
10.1038/s41598-018-38236-5 · 2019 · External reference
Acyclic isoprenoid biomarkers and evolution of biosynthetic pathways in green microalgae of the genus Botryococcus
10.1016/j.orggeochem.2014.06.005 · 2014 · External reference
The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes
10.1101/gr.174302 · 2002 · External reference
Transposable elements: powerful facilitators of evolution
10.1002/bies.200800219 · 2009 · External reference
The B73 Maize Genome: Complexity, Diversity, and Dynamics
10.1126/science.1178534 · 2009 · External reference
Morphological differences in natural populations of the genus Botryococcus chlorophyceae.
10.1016/s0003-9365(11)80049-7 · 1992 · External reference
Variabilité morphologique de Botryococcus braunii (Chlorococcales, Chlorophyta): corrélations avec les conditions de croissance et la teneur en lipides; Morphological variability of Botryococcus braunii (Chlorococcales, Chlorophyta): correlations with growth conditions and lipid content.
10.2216/i0031-8884-32-4-259.1 · 1993 · External reference
Morphological and Ultrastrucral Features of a Strain of Botryococcus terribilis (Trebouxiophyceae) From Brazil.
10.1111/j.1529-8817.2012.01181.x · 2012 · External reference
Morphological, biochemical, and phylogenetic assessments of eight Botryococcus terribilis strains collected from freshwaters of Transylvania
10.1007/s10811-014-0387-2 · 2015 · External reference
Elucidation of the Potential Hair Growth-Promoting Effect of Botryococcus terribilis, Its Novel Compound Methylated-Meijicoccene, and C32 Botryococcene on Cultured Hair Follicle Dermal Papilla Cells Using DNA Microarray Gene Expression Analysis
10.3390/biomedicines10051186 · 2022 · External reference
Hydrocarbon composition of newly isolated strains of the green microalga Botryococcus braunii
10.1007/bf00003942 · 1995 · External reference
Botryococcus braunii var. showa (Chlorophyceae) from Berkeley, California, United States of America
1988 · External reference
Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species
10.1186/1746-4811-10-21 · 2014 · External reference
Fast and inexpensive protocols for consistent extraction of high quality DNA and RNA from challenging plant and fungal samples for high-throughput SNP genotyping and sequencing applications
10.1371/journal.pone.0206085 · 2018 · External reference
Assembly of long, error-prone reads using repeat graphs
10.1038/s41587-019-0072-8 · 2019 · External reference
Trimmomatic: a flexible trimmer for Illumina sequence data
10.1093/bioinformatics/btu170 · 2014 · External reference
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement
10.1371/journal.pone.0112963 · 2014 · External reference
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green Microalga Botryococcus braunii Race B (Showa).
10.1128/genomea.00524-16 · 2016 · External reference
BlobTools: Interrogation of genome assemblies [version 1; peer review: 2 approved with reservations].
2017 · External reference
Versatile genome assembly evaluation with QUAST-LG
10.1093/bioinformatics/bty266 · 2018 · External reference
Unresolved reference
2019 · External reference
The MaSuRCA genome assembler
10.1093/bioinformatics/btt476 · 2013 · External reference
Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing.
10.1534/g3.118.200162 · 2018 · External reference
Reference-guided de novo assembly approach improves genome reconstruction for related species
2017 · External reference
National Alliance for Advanced Biofuels and Bio-Products Final Technical Report.
2014 · External reference
Review of the algal biology program within the National Alliance for Advanced Biofuels and Bioproducts
10.1016/j.algal.2016.06.002 · 2017 · External reference
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
10.1038/s41587-019-0201-4 · 2019 · External reference
Full-length transcriptome assembly from RNA-Seq data without a reference genome
10.1038/nbt.1883 · 2011 · External reference
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
10.1093/bioinformatics/btl158 · 2006 · External reference
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
10.1093/bioinformatics/btn013 · 2008 · External reference
The Sequence Alignment/Map format and SAMtools
10.1093/bioinformatics/btp352 · 2009 · External reference
BamTools: a C++ API and toolkit for analyzing and managing BAM files
10.1093/bioinformatics/btr174 · 2011 · External reference
Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm
10.1093/nar/gku557 · 2014 · External reference
BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS
2016 · External reference
Using intron position conservation for homology-based gene prediction
10.1093/nar/gkw092 · 2016 · External reference
Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi.
10.1186/s12859-018-2203-5 · 2018 · External reference
Unresolved reference
2019 · External reference
Unresolved reference
2019 · External reference
BRAKER2: Automatic Eukaryotic Genome Annotation with GeneMark-EP+ and AUGUSTUS Supported by a Protein Database.
2020 · External reference
BEDTools: a flexible suite of utilities for comparing genomic features
10.1093/bioinformatics/btq033 · 2010 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
10.1093/molbev/mst010 · 2013 · External reference
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies
10.1093/molbev/msu300 · 2015 · External reference
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
10.1186/s12859-018-2129-y · 2018 · External reference
Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri
10.1126/science.1188800 · 2010 · External reference
Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes
10.1186/1471-2164-15-582 · 2014 · External reference
Genome sequences of Chlorella sorokiniana UTEX 1602 and Micractinium conductrix SAG 241.80: implications to maltose excretion by a green alga
10.1111/tpj.13789 · 2018 · External reference
Nuclear, Chloroplast, and Mitochondrial Genome Sequences of the Prospective Microalgal Biofuel Strain Picochlorum soloecismus.
10.1128/genomea.01498-17 · 2018 · External reference
The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata
10.1186/s12864-019-5629-x · 2019 · External reference
What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen
10.1093/gbe/evaa049 · 2020 · External reference
InterPro in 2022
10.1093/nar/gkac993 · 2022 · External reference
Multiple alignmnet using hidden Markov models
1995 · External reference
Accelerated Profile HMM Searches.
10.1371/journal.pcbi.1002195 · 2011 · External reference
