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References from Development of a novel complex inflammatory bowel disease mouse model: Reproducing human inflammatory bowel disease etiologies in mice. Local targets link to admitted publications; unresolved targets remain external evidence.
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Diet-Microbiota Interactions in Inflammatory Bowel Disease
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Environmental triggers in IBD: a review of progress and evidence
10.1038/nrgastro.2017.136 · 2018 · External reference
Nutrition, IBD and Gut Microbiota: A Review
10.3390/nu12040944 · 2020 · External reference
Identification of environmental factors that promote intestinal inflammation
10.1038/s41586-022-05308-6 · 2022 · External reference
Investigating intestinal inflammation in DSS-induced model of IBD
2012 · External reference
Worldwide incidence and prevalence of inflammatory bowel disease in the 21st century: a systematic review of population-based studies
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British Society of Gastroenterology consensus guidelines on the management of inflammatory bowel disease in adults
10.1136/gutjnl-2019-318484 · 2019 · External reference
Duodenal infusion of donor feces for recurrent Clostridium difficile
10.1056/nejmoa1205037 · 2013 · External reference
Fecal microbiota transplantation in inflammatory bowel disease patients: A systematic review and meta-analysis
10.1371/journal.pone.0238910 · 2020 · External reference
Sugar-sweetened beverages exacerbate high-fat diet-induced inflammatory bowel disease by altering the gut microbiome
10.1016/j.jnutbio.2022.109254 · 2023 · External reference
Gut taste receptor type 1 member 3 is an intrinsic regulator of Western diet-induced intestinal inflammation
10.1186/s12916-023-02848-0 · 2023 · External reference
A murine colitis model developed using a combination of dextran sulfate sodium and Citrobacter rodentium
10.1007/s12275-018-7504-x · 2018 · External reference
Chronic enteric salmonella infection in mice leads to severe and persistent intestinal fibrosis
10.1053/j.gastro.2007.12.043 · 2008 · External reference
Citrobacter rodentium infection in mice elicits a mucosal Th1 cytokine response and lesions similar to those in murine inflammatory bowel disease
10.1128/iai.67.6.3031-3039.1999 · 1999 · External reference
Dextran sulfate sodium-induced colitis occurs in severe combined immunodeficient mice
10.1016/0016-5085(94)90803-6 · 1994 · External reference
Resolvin E1, an endogenous lipid mediator derived from omega-3 eicosapentaenoic acid, protects against 2,4,6-trinitrobenzene sulfonic acid-induced colitis
10.1073/pnas.0409271102 · 2005 · External reference
Oxazolone colitis: A murine model of T helper cell type 2 colitis treatable with antibodies to interleukin 4
10.1084/jem.188.10.1929 · 1998 · External reference
Spontaneous development of inflammatory bowel disease in T cell receptor mutant mice
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Interleukin-10-deficient mice develop chronic enterocolitis
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Differences between immunodeficient mice generated by classical gene targeting and CRISPR/Cas9-mediated gene knockout
10.1007/s11248-018-0069-y · 2018 · External reference
Dextran sodium sulfate (DSS) induces colitis in mice by forming nano-lipocomplexes with medium-chain-length fatty acids in the colon
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DADA2: High-resolution sample inference from Illumina amplicon data
10.1038/nmeth.3869 · 2016 · External reference
Metagenomic biomarker discovery and explanation
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Greengenes2 enables a shared data universe for microbiome studies
2023 · External reference
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
10.1038/s41587-019-0209-9 · 2019 · External reference
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
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The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria
10.1073/pnas.0803124105 · 2008 · External reference
Low counts of Faecalibacterium prausnitzii in colitis microbiota
10.1002/ibd.20903 · 2009 · External reference
The Influence of Probiotics on the Firmicutes/Bacteroidetes Ratio in the Treatment of Obesity and Inflammatory Bowel disease
10.3390/microorganisms8111715 · 2020 · External reference
A Discussion on "Ulcerative Colitis.": Introductory Address
1909 · External reference
Regional ileitis: a pathologic and clinical entity
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ECCO Guidelines on the Prevention, Diagnosis, and Management of Infections in Inflammatory Bowel Disease
10.1093/ecco-jcc/jjab052 · 2021 · External reference
An Update of Research Animal Models of Inflammatory Bowel Disease
10.1155/2021/7479540 · 2021 · External reference
Inflammatory Bowel Disease: A Review of Pre-Clinical Murine Models of Human Disease
10.3390/ijms23169344 · 2022 · External reference
Animal models of inflammatory bowel disease: novel experiments for revealing pathogenesis of colitis, fibrosis, and colitis-associated colon cancer
10.5217/ir.2023.00029 · 2023 · External reference
Crohn’s disease
2011 · External reference
Myeloperoxidase concentrations in the stool as a new parameter of inflammatory bowel disease
10.2739/kurumemedj.45.69 · 1998 · External reference
Caspase-8 regulates TNF-α-induced epithelial necroptosis and terminal ileitis
10.1038/nature10400 · 2011 · External reference
Expression of interleukin 1 beta and interleukin 1 beta converting enzyme by intestinal macrophages in health and inflammatory bowel disease
10.1136/gut.42.2.214 · 1998 · External reference
Enhanced expression of CXCL10 in inflammatory bowel disease: potential role of mucosal Toll-like receptor 3 stimulation
10.1002/ibd.23034 · 2013 · External reference
IFN-γ drives inflammatory bowel disease pathogenesis through VE-cadherin-directed vascular barrier disruption
10.1172/jci124884 · 2019 · External reference
On the Dependency of Cellular Protein Levels on mRNA Abundance
10.1016/j.cell.2016.03.014 · 2016 · External reference
An essential role for interleukin 10 in the function of regulatory T cells that inhibit intestinal inflammation
10.1084/jem.190.7.995 · 1999 · External reference
The Common Cytokine Receptor γ Chain Family of Cytokines
10.1101/cshperspect.a028449 · 2018 · External reference
NF-κB signaling in inflammation
10.1038/sigtrans.2017.23 · 2017 · External reference
Claudin-2 as a mediator of leaky gut barrier during intestinal inflammation
10.4161/21688370.2014.977176 · 2015 · External reference
Tight junctions in inflammatory bowel diseases and inflammatory bowel disease associated colorectal cancer
10.3748/wjg.v22.i11.3117 · 2016 · External reference
High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice
10.1186/s40168-017-0258-6 · 2017 · External reference
Accelerated dysbiosis of gut microbiota during aggravation of DSS-induced colitis by a butyrate-producing bacterium
10.1038/srep27572 · 2016 · External reference
Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels
10.1186/s13099-019-0341-6 · 2020 · External reference
A microbial signature for Crohn’s disease
10.1136/gutjnl-2016-313235 · 2017 · External reference
Dynamics of the human gut microbiome in inflammatory bowel disease
10.1038/nmicrobiol.2017.4 · 2017 · External reference
Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease
10.1016/j.chom.2015.09.008 · 2015 · External reference
Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease
10.1136/gutjnl-2016-312135 · 2018 · External reference
Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease
10.1038/ctg.2017.58 · 2018 · External reference
Gut microbiome structure and metabolic activity in inflammatory bowel disease
10.1038/s41564-018-0306-4 · 2019 · External reference
Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease
10.1371/journal.pone.0039242 · 2012 · External reference
Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome
10.1126/scitranslmed.aap8914 · 2018 · External reference
Insights into the Role of Erysipelotrichaceae in the Human Host
10.3389/fcimb.2015.00084 · 2015 · External reference
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
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Identification of a gut microbiota member that ameliorates DSS-induced colitis in intestinal barrier enhanced Dusp6-deficient mice
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Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family
10.1186/s40168-019-0637-2 · 2019 · External reference
The potential therapeutic role of Lactobacillus reuteri for treatment of inflammatory bowel disease
2020 · External reference
Metallobiology of Lactobacillaceae in the gut microbiome
10.1016/j.jinorgbio.2022.112023 · 2023 · External reference
Murine Genetic Background Has a Stronger Impact on the Composition of the Gut Microbiota than Maternal Inoculation or Exposure to Unlike Exogenous Microbiota
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