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References from Transcriptome analysis under pecan scab infection reveals the molecular mechanisms of the defense response in pecans. Local targets link to admitted publications; unresolved targets remain external evidence.
Pecan Scab
2016 · External reference
Unresolved reference
2018 · External reference
Scab Susceptibility of a Provenance Collection of Pecan in Three Different Seasons in the Southeastern United States
10.1094/pdis-12-15-1398-re · 2016 · External reference
Fungicide Resistance in Venturia effusa, Cause of Pecan Scab: Current Status and Practical Implications
10.1094/phyto-06-20-0221-rvw · 2021 · External reference
Pecan
10.1007/978-1-4419-0763-9_20 · 2012 · External reference
Pathogenic variation of Cladosporium caryigenum isolates and corresponding differential resistance in pecan
10.21273/hortsci.39.3.553 · 2004 · External reference
Population Genetic Structure of Venturia effusa, Cause of Pecan Scab, in the Southeastern United States
10.1094/phyto-10-16-0376-r · 2017 · External reference
Population genetic diversity and structure of the pecan scab pathogen, Venturia effusa, on cv. Desirable and native seedlings, and the impact of marker number
10.1111/ppa.13551 · 2022 · External reference
First description of the sexual stage of Venturia effusa, causal agent of pecan scab
10.1080/00275514.2020.1759998 · 2020 · External reference
Evidence for Sexual Reproduction: Identification, Frequency, and Spatial Distribution of Venturia effusa (Pecan Scab) Mating Type Idiomorphs
10.1094/phyto-07-17-0233-r · 2018 · External reference
Linkage mapping and QTL analysis of pecan (Carya illinoinensis) full-siblings using genotyping-by-sequencing
10.1007/s11295-020-01476-6 · 2020 · External reference
Chromosome-scale assembly reveals asymmetric paleo-subgenome evolution and targets for the acceleration of fungal resistance breeding in the nut crop, pecan
2021 · External reference
Vr2: a new apple scab resistance gene
10.1007/s00122-004-1723-8 · 2004 · External reference
Cloning and functional characterization of the Rvi15 (Vr2) gene for apple scab resistance
10.1007/s11295-013-0678-9 · 2014 · External reference
Successful intergeneric transfer of a major apple scab resistance gene (Rvi6) from apple to pear and precise comparison of the downstream molecular mechanisms of this resistance in both species
10.1186/s12864-021-08157-1 · 2021 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
A detached leaf technique for studying race-specific resistance to Cladosporium caryigenum in pecan
10.21273/jashs.127.5.781 · 2002 · External reference
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
10.1093/nar/gks1219 · 2013 · External reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
10.1038/s41467-021-24328-w · 2021 · External reference
STAR: ultrafast universal RNA-seq aligner
10.1093/bioinformatics/bts635 · 2013 · External reference
HTSeq-a Python framework to work with high-throughput sequencing data
10.1093/bioinformatics/btu638 · 2015 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 · External reference
Pheatmap: pretty heatmaps
2012 · External reference
Unresolved reference
External reference
WGCNA: an R package for weighted correlation network analysis
10.1186/1471-2105-9-559 · 2008 · External reference
Lethality and centrality in protein networks
10.1038/35075138 · 2001 · External reference
Cytoscape: A software environment for integrated models of biomolecular interaction networks
10.1101/gr.1239303 · 2003 · External reference
cytoHubba: identifying hub objects and sub-networks from complex interactome
2014 · External reference
Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCt method
10.1006/meth.2001.1262 · 2001 · External reference
Evaluation of Response to Pecan Scab Pathogen Race Using a Detached Leaflet Protocol
10.21273/hortsci.48.1.63 · 2013 · External reference
Phenylalanine and Tyrosine as Exogenous Precursors of Wheat (Triticum aestivum L.) Secondary Metabolism through PAL-Associated Pathways
10.3390/plants9040476 · 2020 · External reference
Transcriptional networks for lignin biosynthesis: more complex than we thought?
10.1016/j.tplants.2010.12.005 · 2011 · External reference
Protein kinase signaling networks in plant innate immunity
10.1016/j.pbi.2011.05.006 · 2011 · External reference
Transcriptomic analysis of ’Suli’ pear (Pyrus pyrifolia white pear group) buds during the dormancy by RNA-Seq
2012 · External reference
Transcriptome Analysis of Apple Leaves in Response to Powdery Mildew (Podosphaera leucotricha) Infection
2019 · External reference
Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes
10.1186/1471-2164-13-660 · 2012 · External reference
Identification of candidate genes involved in anthocyanin accumulation using Illmuina-based RNA-seq in peach skin
10.1016/j.scienta.2019.02.047 · 2019 · External reference
Differential gene regulatory pathways and co-expression networks associated with fire blight infection in apple (Malus × domestica)
2019 · External reference
Comparative RNA-Seq profiling of berry development between table grape ’Kyoho’ and its early-ripening mutant ’Fengzao’
2016 · External reference
Comparative transcriptome analyses reveal insights into catkin bloom patterns in pecan protogynous and protandrous cultivars
10.1371/journal.pone.0281805 · 2023 · External reference
Development of Cladosporium caryigenum in Pecan Leaves
10.1094/phyto-78-1104 · 1988 · External reference
Developing the pecan scab fungus on susceptible and resistant host and nonhost leaves
10.21273/jashs.121.3.350 · 1996 · External reference
Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivumL.)
10.1186/1471-2164-14-728 · 2013 · External reference
Transcriptome Changes Induced by Botrytis cinereal Stress and Weighted Gene Co-expression Network Analysis (WGCNA) in
10.1007/s11105-021-01325-3 · 2022 · External reference
MAPK Cascades in Plant Disease Resistance Signaling
10.1146/annurev-phyto-082712-102314 · 2013 · External reference
Structure and function analysis of a CC-NBS-LRR protein AT1G12290
10.1016/j.bbrc.2020.11.111 · 2021 · External reference
Plant NBS-LRR proteins: adaptable guards
10.1186/gb-2006-7-4-212 · 2006 · External reference
Evolution and conservation of plant NLR functions
10.3389/fimmu.2013.00297 · 2013 · External reference
The CC-NBS-LRR subfamily in Pinus monticola: Targeted identification, gene expression, and genetic linkage with resistance to Cronartium ribicola
10.1094/phyto-97-6-0728 · 2007 · External reference
TIR-NBS-LRR genes are rare in monocots: evidence from diverse monocot orders
10.1186/1756-0500-2-197 · 2009 · External reference
Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes
10.1111/j.1469-8137.2011.04006.x · 2012 · External reference
Scab resistance in ’Geneva’ apple is conditioned by a resistance gene cluster with complex genetic control
10.1111/mpp.12269 · 2016 · External reference
A candidate gene for fire blight resistance in Malus × robusta 5 is coding for a CC-NBS-LRR
10.1007/s11295-012-0550-3 · 2013 · External reference
The Rvi15 (Vr2) apple scab resistance locus contains three TIR-NBS-LRR genes
10.1094/mpmi-23-5-0608 · 2010 · External reference
A TIR-NBS-LRR Gene MdTNL1 Regulates Resistance to Glomerella Leaf Spot in Apple
2022 · External reference
The Gossypium hirsutum TIR-NBS-LRR gene GhDSC1 mediates resistance against Verticillium wilt
10.1111/mpp.12797 · 2019 · External reference
Cotton CC-NBS-LRR Gene GbCNL130 Confers Resistance to Verticillium Wilt Across Different Species
2021 · External reference
The powdery mildew resistance gene REN1 co-segregates with an NBS-LRR gene cluster in two Central Asian grapevines
10.1186/1471-2156-10-89 · 2009 · External reference
CC-NBS-LRR, a set of VvCRP markers, can distinguish cultivars with ripe rot resistance to Colletotrichum pathogens in grapevine
10.1007/s13580-020-00290-2 · 2020 · External reference
The Sm gene conferring resistance to gray leaf spot disease encodes an NBS-LRR (nucleotide-binding site-leucine-rich repeat) plant resistance protein in tomato
10.1007/s00122-022-04047-6 · 2022 · External reference
Arabidopsis Transmembrane Receptor-Like Kinases (RLKs): A Bridge between Extracellular Signal and Intracellular Regulatory Machinery
10.3390/ijms21114000 · 2020 · External reference
Expansion and Function of Repeat Domain Proteins During Stress and Development in Plants
2015 · External reference
The Tomato Leucine-Rich Repeat Receptor-Like Kinases SlSERK3A and SlSERK3B Have Overlapping Functions in Bacterial and Nematode Innate Immunity
2014 · External reference
Unresolved reference
2011 · External reference
An XA21-Associated Kinase (OsSERK2) Regulates Immunity Mediated by the XA21 and XA3 Immune Receptors
10.1093/mp/ssu003 · 2014 · External reference
A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance
10.1007/s11103-008-9430-5 · 2009 · External reference
A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21
10.1126/science.270.5243.1804 · 1995 · External reference
The HcrVf2 gene from a wild apple confers scab resistance to a transgenic cultivated variety
10.1073/pnas.0304808101 · 2004 · External reference
Apple contains receptor-like genes homologous to the Cladosporium fulvum resistance gene family of tomato with a cluster of genes cosegregating with Vf apple scab resistance
10.1094/mpmi.2001.14.4.508 · 2001 · External reference
CsWAKL08, a pathogen-induced wall-associated receptor-like kinase in sweet orange, confers resistance to citrus bacterial canker via ROS control and JA signaling
10.1038/s41438-020-0263-y · 2020 · External reference
The maize disease resistance gene Htn1 against northern corn leaf blight encodes a wall-associated receptor-like kinase
10.1073/pnas.1502522112 · 2015 · External reference
TaWAK6 encoding wall-associated kinase is involved in wheat resistance to leaf rust similar to adult plant resistance
10.1371/journal.pone.0227713 · 2020 · External reference
The Wall-Associated Receptor-Like Kinase TaWAK7D Is Required for Defense Responses to Rhizoctonia cerealis in Wheat
2021 · External reference
Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici
10.1038/s41588-018-0051-x · 2018 · External reference
The role of WRKY transcription factors in plant immunity
10.1104/pp.109.138990 · 2009 · External reference
Barley MLA immune receptors directly interfere with antagonistically acting transcription factors to initiate disease resistance signaling
10.1105/tpc.113.109942 · 2013 · External reference
Nuclear activity of MLA immune receptors links isolate-specific and basal disease-resistance responses
10.1126/science.1136372 · 2007 · External reference
The wheat WRKY transcription factors TaWRKY49 and TaWRKY62 confer differential high-temperature seedling-plant resistance to Puccinia striiformis f. sp. tritici
10.1371/journal.pone.0181963 · 2017 · External reference
Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction
10.1073/pnas.1222155110 · 2013 · External reference
GhWRKY15, a member of the WRKY transcription factor family identified from cotton (Gossypium hirsutum L.), is involved in disease resistance and plant development
10.1186/1471-2229-12-144 · 2012 · External reference
The WRKY transcription factor WRKY8 promotes resistance to pathogen infection and mediates drought and salt stress tolerance in Solanum lycopersicum
10.1111/ppl.12978 · 2020 · External reference
Tomato WRKY transcriptional factor SlDRW1 is required for disease resistance against Botrytis cinerea and tolerance to oxidative stress
10.1016/j.plantsci.2014.08.001 · 2014 · External reference
MdWRKY74 is involved in resistance response to apple replant disease
10.1007/s10725-021-00766-w · 2022 · External reference
MdWRKY100 encodes a group I WRKY transcription factor in Malus domestica that positively regulates resistance to Colletotrichum gloeosporioides infection
10.1016/j.plantsci.2019.06.001 · 2019 · External reference
The R2R3 MYB transcription factor MdMYB30 modulates plant resistance against pathogens by regulating cuticular wax biosynthesis
2019 · External reference
R2R3-MYB Transcription Factor MdMYB73 Confers Increased Resistance to the Fungal Pathogen Botryosphaeria dothidea in Apples via the Salicylic Acid Pathway
10.1021/acs.jafc.0c06740 · 2021 · External reference
The PcMYB44-mediated miR397-PcLACs module regulates defence-induced lignification in pear resistance to fungal disease
10.1111/mpp.13357 · 2023 · External reference
Plant cell wall-mediated immunity: cell wall changes trigger disease resistance responses
10.1111/tpj.13807 · 2018 · External reference
Cell wall associated immunity in plants
10.1007/s44154-021-00003-4 · 2021 · External reference
Cell wall modification and lignin biosynthesis involved in disease resistance against Diaporthe citri in harvested pummelo fruit elicited by carvacrol
10.1002/jsfa.11657 · 2022 · External reference
Expression of Lignin Biosynthetic Genes in Wheat during Development and upon Infection by Fungal Pathogens
10.1007/s11105-010-0219-8 · 2011 · External reference
Contribution of both lignin content and sinapyl monomer to disease resistance in tobacco
10.1111/ppa.12767 · 2018 · External reference
Soybean Stem Lignin Concentration Relates to Resistance to Sclerotinia sclerotiorum
10.1094/pdis-93-2-0149 · 2009 · External reference
Methionine enhances disease resistance of jujube fruit against postharvest black spot rot by activating lignin biosynthesis
2022 · External reference
Regulation of lignin formation in reed canarygrass in relation to disease resistance
10.1104/pp.57.6.915 · 1976 · External reference
Molecular cloning and functional analysis of 4-Coumarate:CoA ligase 4(4CL-like 1)from Fraxinus mandshurica and its role in abiotic stress tolerance and cell wall synthesis
10.1186/s12870-019-1812-0 · 2019 · External reference
LACCASE Is Necessary and Nonredundant with PEROXIDASE for Lignin Polymerization during Vascular Development in Arabidopsis
10.1105/tpc.113.117770 · 2013 · External reference
Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance
10.1007/s11103-014-0275-9 · 2015 · External reference
Rice (Oryza sativa L.) cytochrome P450 protein 716A subfamily CYP716A16 regulates disease resistance
10.1186/s12864-022-08568-8 · 2022 · External reference
Metabolomics of Two Pecan Varieties Provides Insights into Scab Resistance
2018 · External reference
