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References from Intronic RNA of yeast RPL22 paralogs acts as an allosteric switch. Local targets link to admitted publications; unresolved targets remain external evidence.
How common are extraribosomal functions of ribosomal proteins?
10.1016/j.molcel.2009.03.006 · 2009 · External reference
Regulation of p53 translation and induction after DNA damage by ribosomal protein L26 and nucleolin
10.1016/j.cell.2005.07.034 · 2005 · External reference
DAPK-ZIPK-L13a axis constitutes a negative-feedback module regulating inflammatory gene expression
10.1016/j.molcel.2008.09.019 · 2008 · External reference
The GAIT translational control system
10.1002/wrna.1441 · 2017 · External reference
Regulatory roles of Rpl22 in hematopoiesis: An old dog with new tricks
10.1615/critrevimmunol.v35.i5.30 · 2015 · External reference
Introns within ribosomal protein genes regulate the production and function of yeast ribosomes
10.1016/j.cell.2011.08.044 · 2011 · External reference
Mechanisms and regulation of spliceosome-mediated pre-mRNA splicing in Saccharomyces cerevisiae
2024 · External reference
Ribosomal protein S14 of Saccharomyces cerevisiae regulates its expression by binding to RPS14B pre-mRNA and to 18S rRNA
10.1128/mcb.19.1.826 · 1999 · External reference
Diverse forms of RPS9 splicing are part of an evolving autoregulatory circuit
10.1371/journal.pgen.1002620 · 2012 · External reference
Introns regulate the production of ribosomal proteins by modulating splicing of duplicated ribosomal protein genes
10.1093/nar/gkw140 · 2016 · External reference
Splicing-mediated autoregulation modulates Rpl22p expression in Saccharomyces cerevisiae
10.1371/journal.pgen.1005999 · 2016 · External reference
Introns provide a platform for intergenic regulatory feedback of RPL22 paralogs in yeast
10.1371/journal.pone.0190685 · 2018 · External reference
Heterogeneous ribosomes preferentially translate distinct subpools of mRNAs genome-wide
10.1016/j.molcel.2017.05.021 · 2017 · External reference
The Discovery of ribosome heterogeneity and its implications for gene regulation and organismal life
10.1016/j.molcel.2018.07.018 · 2018 · External reference
Specialized ribosomes and the control of translation
10.1042/bst20160426 · 2018 · External reference
Does functional specialization of ribosomes really exist?
10.1261/rna.069823.118 · 2019 · External reference
Heterogeneity in mRNA translation
10.1016/j.tcb.2020.04.008 · 2020 · External reference
Ribosome specialization in cancer: A spotlight on ribosomal proteins
10.1093/narcan/zcae029 · 2024 · External reference
Functional specificity among ribosomal proteins regulates gene expression
10.1016/j.cell.2007.08.037 · 2007 · External reference
Expression of ribosomal protein L22e family members in Drosophila melanogaster: rpL22-like is differentially expressed and alternatively spliced
10.1093/nar/gkq1218 · 2011 · External reference
Functional interplay between ribosomal protein paralogues in the eRpL22 family in Drosophila melanogaster
10.1080/19336934.2018.1549419 · 2018 · External reference
Ribosomal proteins Rpl22 and Rpl22l1 Control morphogenesis by regulating pre-mRNA splicing
10.1016/j.celrep.2016.12.034 · 2017 · External reference
The ribosomal protein Rpl22 controls ribosome composition by directly repressing expression of its own paralog, Rpl22l1
2013 · External reference
Interaction of nascent chains with the ribosomal tunnel proteins Rpl4, Rpl17, and Rpl39 of Saccharomyces cerevisiae
10.1074/jbc.m113.508283 · 2013 · External reference
Ribosomal RNA transcription regulates splicing through ribosomal protein RPL22
10.1016/j.chembiol.2025.05.012 · 2025 · External reference
Identification of two RNA-binding proteins associated with human telomerase RNA
10.1091/mbc.11.3.999 · 2000 · External reference
Multiple domains of EBER 1, an Epstein-Barr virus noncoding RNA, recruit human ribosomal protein L22
10.1261/rna.2339606 · 2006 · External reference
Growth-promoting properties of Epstein-Barr virus EBER-1 RNA correlate with ribosomal protein L22 binding
10.1128/jvi.01014-09 · 2009 · External reference
Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins
10.1038/ncomms1938 · 2012 · External reference
Rpl22 is required for IME1 mRNA translation and meiotic induction in S. cerevisiae
10.1186/s13008-016-0024-3 · 2016 · External reference
The roles of structural dynamics in the cellular functions of RNAs
10.1038/s41580-019-0136-0 · 2019 · External reference
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
10.1038/nature12894 · 2014 · External reference
Dawn of the in vivo RNA structurome and interactome
10.1042/bst20160075 · 2016 · External reference
Understanding the transcriptome through RNA structure
10.1038/nrg3049 · 2011 · External reference
RNA structure replaces the need for U2AF2 in splicing
10.1101/gr.181008.114 · 2016 · External reference
Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes
10.1093/nar/gkl1050 · 2007 · External reference
RNA structural patterns and splicing: molecular basis for an RNA-based enhancer
1995 · External reference
Secondary structure is required for 3’ splice site recognition in yeast
10.1093/nar/gkr662 · 2011 · External reference
Modulation of alternative splicing by long-range RNA structures in Drosophila
10.1093/nar/gkp407 · 2009 · External reference
Mutually exclusive splicing of the insect Dscam pre-mRNA directed by competing intronic RNA secondary structures
10.1016/j.cell.2005.07.028 · 2005 · External reference
RNA structure and the mechanisms of alternative splicing
10.1016/j.gde.2011.04.001 · 2011 · External reference
An Evolutionary mechanism for the generation of competing RNA structures associated with mutually exclusive exons
10.3390/genes9070356 · 2018 · External reference
BRD2 and BRD3 genes independently evolved RNA structures to control unproductive splicing
2024 · External reference
Role of RNA structure in regulating pre-mRNA splicing
10.1016/j.tibs.2009.10.004 · 2010 · External reference
MBNL1 regulates essential alternative RNA splicing patterns in MLL-rearranged leukemia
10.1038/s41467-020-15733-8 · 2020 · External reference
How does precursor RNA structure influence RNA processing and gene expression?
10.1042/bsr20220149 · 2023 · External reference
Alternative RNA structures formed during transcription depend on elongation rate and modify RNA processing
10.1016/j.molcel.2021.01.040 · 2021 · External reference
Transcription complexes as RNA chaperones
10.1080/21541264.2021.1985931 · 2021 · External reference
Secondary structures in RNA synthesis, splicing and translation
10.1016/j.csbj.2022.05.041 · 2022 · External reference
Transcription regulation through nascent RNA folding
10.1016/j.jmb.2021.166975 · 2021 · External reference
Co-transcriptional gene regulation in eukaryotes and prokaryotes
10.1038/s41580-024-00706-2 · 2024 · External reference
ViennaRNA Package 2.0
10.1186/1748-7188-6-26 · 2011 · External reference
The ViennaRNA Web Services.
10.1007/978-1-4939-2291-8_19 · 2015 · External reference
The RNA shapes studio
10.1093/bioinformatics/btu649 · 2015 · External reference
Mfold web server for nucleic acid folding and hybridization prediction
10.1093/nar/gkg595 · 2003 · External reference
RNAshapes: an integrated RNA analysis package based on abstract shapes
10.1093/bioinformatics/btk010 · 2006 · External reference
A statistical sampling algorithm for RNA secondary structure prediction
10.1093/nar/gkg938 · 2003 · External reference
Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams
10.1093/bioinformatics/btv372 · 2015 · External reference
Widespread use of non-productive alternative splice sites in Saccharomyces cerevisiae
10.1371/journal.pgen.1004249 · 2014 · External reference
Alternative splicing in next generation sequencing data of Saccharomyces cerevisiae
10.1371/journal.pone.0140487 · 2015 · External reference
Identification of new branch points and unconventional introns in Saccharomyces cerevisiae
10.1261/rna.057216.116 · 2016 · External reference
Transcription rate strongly affects splicing fidelity and cotranscriptionality in budding yeast
10.1101/gr.225615.117 · 2018 · External reference
Nineteen complex-related factor Prp45 is required for the early stages of cotranscriptional spliceosome assembly
10.1261/rna.061986.117 · 2017 · External reference
The structure of the eukaryotic ribosome at 3.0 Å resolution
10.1126/science.1212642 · 2011 · External reference
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
10.1002/pro.3943 · 2021 · External reference
Ribosome deficiency protects against ER stress in Saccharomyces cerevisiae
10.1534/genetics.111.136549 · 2012 · External reference
Comprehensive analysis of Saccharomyces cerevisiae intron structures in vivo
10.1038/s41594-025-01565-x · 2025 · External reference
A yeast intronic splicing enhancer and Nam8p are required for Mer1p-activated splicing
10.1016/s1097-2765(00)00033-2 · 2000 · External reference
Splice site choice and splicing efficiency are positively influenced by pre-mRNA intramolecular base pairing in yeast
10.1016/0092-8674(93)90578-e · 1993 · External reference
Intramolecular structure in yeast introns aids the early steps of in vitro spliceosome assembly
1996 · External reference
Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae
10.1186/1471-2164-9-355 · 2008 · External reference
Luc7p, a novel yeast U1 snRNP protein with a role in 5’ splice site recognition
10.1101/gad.13.18.2425 · 1999 · External reference
Genetic and physical interactions involving the yeast nuclear cap-binding complex
10.1128/mcb.19.10.6543 · 1999 · External reference
Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex
10.1016/j.molcel.2005.05.007 · 2005 · External reference
The nuclear cap-binding complex as choreographer of gene transcription and pre-mRNA processing
10.1101/gad.339986.120 · 2020 · External reference
A BBP-Mud2p heterodimer mediates branchpoint recognition and influences splicing substrate abundance in budding yeast
10.1093/nar/gkn144 · 2008 · External reference
Structural Basis of Nuclear pre-mRNA Splicing: Lessons from Yeast
10.1101/cshperspect.a032391 · 2019 · External reference
A unified mechanism for intron and exon definition and back-splicing
10.1038/s41586-019-1523-6 · 2019 · External reference
Structure-function analysis and genetic interactions of the yeast branchpoint binding protein Msl5
10.1093/nar/gks049 · 2012 · External reference
Prespliceosome structure provides insights into spliceosome assembly and regulation
10.1038/s41586-018-0323-8 · 2018 · External reference
Structural insights into nuclear pre-mRNA Splicing in higher eukaryotes
10.1101/cshperspect.a032417 · 2019 · External reference
Regulation of splicing at an intermediate step in the formation of the spliceosome
10.1101/gad.8.2.211 · 1994 · External reference
L30 binds the nascent RPL30 transcript to repress U2 snRNP recruitment
10.1016/j.molcel.2008.05.002 · 2008 · External reference
Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae
10.1017/s1355838299981682 · 1999 · External reference
Root of the tree: The significance, evolution, and origins of the ribosome
10.1021/acs.chemrev.9b00742 · 2020 · External reference
Dynamic protein-RNA interactions in mediating splicing catalysis
10.1093/nar/gky1089 · 2019 · External reference
Structural insights into how Prp5 proofreads the pre-mRNA branch site
10.1038/s41586-021-03789-5 · 2021 · External reference
Quantitative prediction of variant effects on alternative splicing in MAPT using endogenous pre-messenger RNA structure probing
10.7554/elife.73888 · 2022 · External reference
Alternate RNA structures
2020 · External reference
Structures of aberrant spliceosome intermediates on their way to disassembly
10.1038/s41594-024-01480-7 · 2025 · External reference
Finding and recycling stalled spliceosomes
10.1038/s41594-025-01536-2 · 2025 · External reference
Causes, functions, and therapeutic possibilities of RNA secondary structure ensembles and alternative states
10.1016/j.chembiol.2023.12.010 · 2024 · External reference
Conformational dynamics of stem II of the U2 snRNA
10.1261/rna.052233.115 · 2016 · External reference
The T-Box Riboswitch: tRNA as an effector to modulate gene regulation
10.1128/microbiolspec.rwr-0028-2018 · 2018 · External reference
An evolving tale of two interacting RNAs-themes and variations of the T-box riboswitch mechanism
10.1002/iub.2098 · 2019 · External reference
A stress-responsive RNA switch regulates VEGFA expression
10.1038/nature07598 · 2009 · External reference
Mammalian RNA switches: Molecular rheostats in gene regulation, disease, and medicine
10.1016/j.csbj.2019.10.001 · 2019 · External reference
hnRNP L-mediated RNA switches function as a hypoxia-induced translational regulon
10.1016/j.bbrc.2019.06.106 · 2019 · External reference
High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
10.1038/nprot.2007.13 · 2007 · External reference