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References from The Salmonella phage shock protein system is required for defense against host antimicrobial peptides. Local targets link to admitted publications; unresolved targets remain external evidence.
Non-typhoidal Salmonella transmission reservoirs in Sub-Saharan Africa: a genomic assessment from a one health perspective
10.1186/s13756-025-01561-2 · 2025 · External reference
Global Burden of Invasive Nontyphoidal Salmonella Disease
10.3201/eid2106.140999 · 2015 · External reference
The global burden of non-typhoidal salmonella invasive disease: a systematic analysis for the Global Burden of Disease Study 2017
10.1016/s1473-3099(19)30418-9 · 2019 · External reference
Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa
10.1038/s41564-020-00836-1 · 2021 · External reference
Global trends in typhoid and paratyphoid, and invasive non-typhoidal salmonella, and the burden of antimicrobial resistance: a trend analysis study from 1990 to 2021
10.3389/fmed.2025.1588507 · 2025 · External reference
Salmonella Populations inside Host Cells
10.3389/fcimb.2017.00432 · 2017 · External reference
Salmonella enterica Remodels the Host Cell Endosomal System for Efficient Intravacuolar Nutrition
10.1016/j.chom.2017.02.005 · 2017 · External reference
Comprehensive Single Cell Analyses of the Nutritional Environment of Intracellular Salmonella enterica
10.3389/fcimb.2021.624650 · 2021 · External reference
Dynamics of growth and dissemination of Salmonella in vivo
10.1111/j.1462-5822.2010.01511.x · 2010 · External reference
Salmonella manipulates macrophage migration via SteC-mediated myosin light chain activation to penetrate the gut-vascular barrier
10.1038/s44318-024-00076-7 · 2024 · External reference
Hoodwinking the Big-Eater to Prosper: The Salmonella-Macrophage Paradigm
10.1159/000490953 · 2019 · External reference
Two-component signal transduction systems, environmental signals, and virulence
10.1007/s00248-005-0087-1 · 2006 · External reference
Multiple histidines in the periplasmic domain of the Salmonella enterica sensor kinase SsrA enhance signaling in response to extracellular acidification
10.1111/mmi.12895 · 2015 · External reference
The role of two-component regulatory systems in environmental sensing and virulence in Salmonella
10.1080/1040841x.2021.1895067 · 2021 · External reference
Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica
10.1046/j.1365-2958.2003.03313.x · 2003 · External reference
During infection of epithelial cells Salmonella enterica serovar Typhimurium undergoes a time-dependent transcriptional adaptation that results in simultaneous expression of three type 3 secretion systems
10.1111/j.1462-5822.2007.01099.x · 2008 · External reference
Sequencing technologies - the next generation
10.1038/nrg2626 · 2010 · External reference
RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium
10.1371/journal.ppat.1005262 · 2015 · External reference
Profiling Salmonella transcriptional dynamics during macrophage infection using a comprehensive reporter library
10.1038/s41564-025-01953-5 · 2025 · External reference
Macrophage variants in laboratory research: most are well done, but some are RAW
10.3389/fcimb.2024.1457323 · 2024 · External reference
Fit to dwell in many places - The growing diversity of intracellular Salmonella niches
10.3389/fcimb.2022.989451 · 2022 · External reference
Acidification of phagosomes containing Salmonella typhimurium in murine macrophages
10.1128/iai.64.7.2765-2773.1996 · 1996 · External reference
Decline in nitrosative stress drives antibiotic persister regrowth during infection
10.1016/j.chom.2023.05.002 · 2023 · External reference
Direct measurement of oxidative and nitrosative stress dynamics in Salmonella inside macrophages
10.1073/pnas.1414569112 · 2015 · External reference
Maturation steps of the Salmonella-containing vacuole
10.1016/s1286-4579(01)01490-3 · 2001 · External reference
Interplay between antibacterial effectors: a macrophage antimicrobial peptide impairs intracellular Salmonella replication
10.1073/pnas.0304455101 · 2004 · External reference
A survey of best practices for RNA-seq data analysis
10.1186/s13059-016-0881-8 · 2016 · External reference
How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
10.1186/1471-2164-13-734 · 2012 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
Physiological stress drives the emergence of a Salmonella subpopulation through ribosomal RNA regulation
10.1016/j.cub.2023.09.064 · 2023 · External reference
Direct binding of FtsZ to ZipA, an essential component of the septal ring structure that mediates cell division in E. coli
10.1016/s0092-8674(00)81838-3 · 1997 · External reference
A Comprehensive Assessment of the Genetic Determinants in Salmonella Typhimurium for Resistance to Hydrogen Peroxide Using Proteogenomics
10.1038/s41598-017-17149-9 · 2017 · External reference
Nitric oxide homeostasis in Salmonella typhimurium: roles of respiratory nitrate reductase and flavohemoglobin
10.1074/jbc.m708019200 · 2008 · External reference
The genetic basis of tetrathionate respiration in Salmonella typhimurium
10.1046/j.1365-2958.1999.01345.x · 1999 · External reference
Microbiota-derived hydrogen fuels Salmonella Typhimurium invasion of the gut ecosystem
10.1016/j.chom.2013.11.002 · 2013 · External reference
FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s)
10.1128/jb.00726-06 · 2007 · External reference
Glucose and Glycolysis Are Required for the Successful Infection of Macrophages and Mice by Salmonella enterica Serovar Typhimurium
10.1128/iai.00093-09 · 2009 · External reference
Salmonella enterica Requires Lipid Metabolism Genes To Replicate in Proinflammatory Macrophages and Mice
10.1128/iai.00776-19 · 2019 · External reference
Ethanolamine Signaling Promotes Salmonella Niche Recognition and Adaptation during Infection
10.1371/journal.ppat.1005278 · 2015 · External reference
Ethanolamine utilization in Salmonella Typhimurium
10.1128/jb.170.9.3855-3863.1988 · 1988 · External reference
The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation
10.1128/jb.181.19.5967-5975.1999 · 1999 · External reference
Fermentation mechanism of fucose and rhamnose in Salmonella typhimurium and Klebsiella pneumoniae
10.1128/jb.161.1.435-437.1985 · 1985 · External reference
Salmonella pathogenicity islands in the genomic era
10.1016/j.tim.2025.02.007 · 2025 · External reference
Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system
10.1371/journal.pgen.1000875 · 2010 · External reference
The mechanism of Salmonella entry determines the vacuolar environment and intracellular gene expression
10.1111/j.1600-0854.2005.00360.x · 2006 · External reference
An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium
10.1016/j.chom.2013.11.010 · 2013 · External reference
The SOS system: A complex and tightly regulated response to DNA damage
10.1002/em.22267 · 2019 · External reference
OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteins
10.1073/pnas.86.10.3484 · 1989 · External reference
Nitric oxide and salmonella pathogenesis
10.3389/fmicb.2011.00084 · 2011 · External reference
Prophages in Salmonella enterica: a driving force in reshaping the genome and physiology of their bacterial host?
10.1111/mmi.14167 · 2019 · External reference
Identification of GtgE, a novel virulence factor encoded on the Gifsy-2 bacteriophage of Salmonella enterica serovar Typhimurium
10.1128/jb.184.19.5234-5239.2002 · 2002 · External reference
The Salmonella Typhimurium effector protein SopE transiently localizes to the early SCV and contributes to intracellular replication
10.1111/cmi.12333 · 2014 · External reference
A prophage competition element protects Salmonella from lysis
10.1016/j.chom.2024.10.012 · 2024 · External reference
D-galactonate metabolism in enteric bacteria: a molecular and physiological perspective
10.1016/j.mib.2024.102524 · 2024 · External reference
Iron Transport and Metabolism in Escherichia, Shigella, and Salmonella
2021 · External reference
Proteomic delineation of the arca regulon in Salmonella Typhimurium during anaerobiosis
10.1074/mcp.ra117.000563 · 2018 · External reference
The phage-shock-protein response
10.1111/j.1365-2958.2005.04694.x · 2005 · External reference
The phage shock protein response
10.1146/annurev-micro-102215-095359 · 2016 · External reference
Evolution of Salmonella-Host Cell Interactions through a Dynamic Bacterial Genome
10.3389/fcimb.2017.00428 · 2017 · External reference
Salmonellae PhoPQ regulation of the outer membrane to resist innate immunity
10.1016/j.mib.2013.12.005 · 2014 · External reference
The Salmonella PmrAB regulon: lipopolysaccharide modifications, antimicrobial peptide resistance and more
10.1016/j.tim.2008.03.007 · 2008 · External reference
The response regulator SsrB activates expression of diverse Salmonella pathogenicity island 2 promoters and counters silencing by the nucleoid-associated protein H-NS
10.1111/j.1365-2958.2007.05800.x · 2007 · External reference
Expression and secretion of Salmonella pathogenicity island-2 virulence genes in response to acidification exhibit differential requirements of a functional type III secretion apparatus and SsaL
10.1074/jbc.m404299200 · 2004 · External reference
Compensatory role of PspA, a member of the phage shock protein operon, in rpoE mutant Salmonella enterica serovar Typhimurium
10.1111/j.1365-2958.2005.04604.x · 2005 · External reference
Pathogenic adaptation of intracellular bacteria by rewiring a cis-regulatory input function
10.1073/pnas.0811669106 · 2009 · External reference
Removal of the phage-shock protein PspB causes reduction of virulence in Salmonella enterica serovar Typhimurium independently of NRAMP1
10.1099/jmm.0.072223-0 · 2014 · External reference
Haplotype mapping and sequence analysis of the mouse Nramp gene predict susceptibility to infection with intracellular parasites
10.1006/geno.1994.1458 · 1994 · External reference
Involvement of stress protein PspA (phage shock protein A) of Escherichia coli in maintenance of the protonmotive force under stress conditions
10.1002/j.1460-2075.1996.tb00344.x · 1996 · External reference
Escherichia coli phage-shock protein A (PspA) binds to membrane phospholipids and repairs proton leakage of the damaged membranes
10.1111/j.1365-2958.2007.05893.x · 2007 · External reference
The phage shock protein PspA facilitates divalent metal transport and is required for virulence of Salmonella enterica sv. Typhimurium
10.1111/j.1365-2958.2010.07357.x · 2010 · External reference
Interconversion of components of the bacterial proton motive force by electrogenic potassium transport
10.1128/jb.147.3.820-826.1981 · 1981 · External reference
Potentiation of Antibiotics against Gram-Negative Bacteria by Polymyxin B Analogue SPR741 from Unique Perturbation of the Outer Membrane
10.1021/acsinfecdis.9b00159 · 2020 · External reference
Binding of polymyxin B nonapeptide to gram-negative bacteria
10.1128/aac.27.4.548 · 1985 · External reference
Agents that increase the permeability of the outer membrane
10.1128/mr.56.3.395-411.1992 · 1992 · External reference
Cationic host defense (antimicrobial) peptides
10.1016/j.coi.2005.11.004 · 2006 · External reference
Interactions of an antimicrobial peptide, magainin 2, with outer and inner membranes of Gram-negative bacteria
10.1016/s0005-2736(97)00051-5 · 1997 · External reference
The expanding scope of antimicrobial peptide structures and their modes of action
10.1016/j.tibtech.2011.05.001 · 2011 · External reference
Antimicrobial Peptides of Multicellular Organisms: My Perspective
10.1007/978-981-13-3588-4_1 · 2019 · External reference
Identification of CRAMP, a cathelin-related antimicrobial peptide expressed in the embryonic and adult mouse
10.1074/jbc.272.20.13088 · 1997 · External reference
Requirement of CRAMP for mouse macrophages to eliminate phagocytosed E. coli through an autophagy pathway
10.1242/jcs.252148 · 2021 · External reference
Cathelicidin is involved in the intracellular killing of mycobacteria in macrophages
10.1111/j.1462-5822.2011.01644.x · 2011 · External reference
Mig-14 is an inner membrane-associated protein that promotes Salmonella typhimurium resistance to CRAMP, survival within activated macrophages and persistent infection
10.1111/j.1365-2958.2004.04444.x · 2005 · External reference
PmrA-PmrB-regulated genes necessary for 4-aminoarabinose lipid A modification and polymyxin resistance
10.1046/j.1365-2958.1998.00757.x · 1998 · External reference
Chemiosmotic coupling in oxidative and photosynthetic phosphorylation. 1966
10.1016/j.bbabio.2011.09.018 · 2011 · External reference
Collapsing the proton motive force to identify synergistic combinations against Staphylococcus aureus
10.1016/j.chembiol.2013.07.006 · 2013 · External reference
Gut inflammation provides a respiratory electron acceptor for Salmonella
10.1038/nature09415 · 2010 · External reference
An Oxidative Central Metabolism Enables Salmonella to Utilize Microbiota-Derived Succinate
10.1016/j.chom.2017.07.018 · 2017 · External reference
Nonredundant Dimethyl Sulfoxide Reductases Influence Salmonella enterica Serotype Typhimurium Anaerobic Growth and Virulence
10.1128/iai.00578-22 · 2023 · External reference
Salmonella versus the Microbiome
2020 · External reference
Salmonella pathogenicity island 2 mediates protection of intracellular Salmonella from reactive nitrogen intermediates
10.1084/jem.20011547 · 2002 · External reference
Salmonella Typhimurium reprograms macrophage metabolism via T3SS effector SopE2 to promote intracellular replication and virulence
10.1038/s41467-021-21186-4 · 2021 · External reference
A transcriptomic analysis of the effects of macrophage polarization and endotoxin tolerance on the response to Salmonella
10.1371/journal.pone.0276010 · 2022 · External reference
Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica
10.1371/journal.ppat.1009280 · 2021 · External reference
The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid
10.1371/journal.ppat.1007948 · 2019 · External reference
Structure and function of PspA and Vipp1 N-terminal peptides: Insights into the membrane stress sensing and mitigation
10.1016/j.bbamem.2016.10.018 · 2017 · External reference
PspA can form large scaffolds in Escherichia coli
10.1016/j.febslet.2008.09.002 · 2008 · External reference
The evolution of the phage shock protein response system: interplay between protein function, genomic organization, and system function
10.1093/molbev/msq301 · 2011 · External reference
The biology of the PmrA/PmrB two-component system: the major regulator of lipopolysaccharide modifications
10.1146/annurev-micro-092412-155751 · 2013 · External reference
Macrophage-dependent induction of the Salmonella pathogenicity island 2 type III secretion system and its role in intracellular survival
10.1046/j.1365-2958.1998.01048.x · 1998 · External reference
Salmonella pathogenicity island 1-independent induction of apoptosis in infected macrophages by Salmonella enterica serotype typhimurium
10.1128/iai.68.10.5702-5709.2000 · 2000 · External reference
Regulatory evolution drives evasion of host inflammasomes by Salmonella Typhimurium
10.1016/j.celrep.2018.09.078 · 2018 · External reference
The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella
10.1371/journal.ppat.1006497 · 2017 · External reference
Multiple redundant stress resistance mechanisms are induced in Salmonella enterica serovar Typhimurium in response to alteration of the intracellular environment via TLR4 signalling
10.1099/mic.0.030429-0 · 2009 · External reference
The infectious intracellular lifestyle of Salmonella enterica relies on the adaptation to nutritional conditions within the Salmonella-containing vacuole
10.1080/21505594.2016.1270493 · 2017 · External reference
Fluorescent protein-based reporters reveal stress response of intracellular Salmonella enterica at level of single bacterial cells
10.1111/cmi.13293 · 2021 · External reference
Single-cell RNA-seq ties macrophage polarization to growth rate of intracellular Salmonella
10.1038/nmicrobiol.2016.206 · 2016 · External reference
Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of human immune cells
10.1038/s41467-019-11257-y · 2019 · External reference
scDual-Seq: mapping the gene regulatory program of Salmonella infection by host and pathogen single-cell RNA-sequencing
10.1186/s13059-017-1340-x · 2017 · External reference
Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions
10.1038/nature16547 · 2016 · External reference
SseA is required for translocation of Salmonella pathogenicity island-2 effectors into host cells
10.1016/s1286-4579(03)00094-7 · 2003 · External reference
Targeting Two-Component Systems Uncovers a Small-Molecule Inhibitor of Salmonella Virulence
2020 · External reference
Transcriptional priming of Salmonella Pathogenicity Island-2 precedes cellular invasion
10.1371/journal.pone.0021648 · 2011 · External reference
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
10.1073/pnas.120163297 · 2000 · External reference
High-Throughput Chemical Screening for Inhibitors of Salmonella Pathogenicity Island 2
10.1016/j.xpro.2020.100057 · 2020 · External reference
Expression of flagella is coincident with uropathogenic Escherichia coli ascension to the upper urinary tract
10.1073/pnas.0607898104 · 2007 · External reference
FastQ Screen: A tool for multi-genome mapping and quality control
10.12688/f1000research.15931.1 · 2018 · External reference
Trimmomatic: a flexible trimmer for Illumina sequence data
10.1093/bioinformatics/btu170 · 2014 · External reference
Fast and accurate long-read alignment with Burrows-Wheeler transform
10.1093/bioinformatics/btp698 · 2010 · External reference
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
10.1093/bioinformatics/btt656 · 2014 · External reference
Unresolved reference
2024 · External reference
Unresolved reference
2022 · External reference
Circlize implements and enhances circular visualization in R
10.1093/bioinformatics/btu393 · 2014 · External reference
Unresolved reference
2018 · External reference
