References

Infectious laryngotracheitis.

10.1002/9781119421481.ch5 · 2013 · External reference

Laryngotracheitis herpesvirus infection in the chicken: the role of humoral antibody in immunity to a graded challenge infection

10.1080/03079458308436195 · 1983 · External reference

Avian infectious laryngotracheitis

10.20506/rst.19.2.1229 · 2000 · External reference

The role of cell-mediated immunity in chickens inoculated with the cell-associated vaccine of attenuated infectious laryngotracheitis virus

10.1292/jvms.56.1051 · 1994 · External reference

The role of mucosal antibody in immunity to infectious laryngotracheitis virus in chickens

10.1099/0022-1317-71-10-2401 · 1990 · External reference

Assessing the infiltration of immune cells in the upper trachea mucosa after infectious laryngotracheitis virus (ILTV) vaccination and challenge

10.1080/03079457.2021.1989379 · 2021 · External reference

Investigation onto the correlation between systemic antibodies to surface glycoproteins of infectious laryngotracheitis virus (ILTV) and protective immunity

10.1016/j.vetmic.2018.12.010 · 2019 · External reference

Infectious laryngotracheitis: an update on current approaches for prevention of an old disease

10.1093/jas/skaa133 · 2020 · External reference

The logic of virus evolution

10.1016/j.chom.2022.06.008 · 2022 · External reference

Viral mimicry of cytokines, chemokines and their receptors

10.1038/nri980 · 2003 · External reference

Human herpesvirus 8 encodes a homolog of interleukin-6

10.1128/jvi.71.1.839-842.1997 · 1997 · External reference

Herpesvirus Saimiri encodes a new cytokine, IL-17, which binds to a novel cytokine receptor

10.1016/1074-7613(95)90070-5 · 1995 · External reference

Homology of cytokine synthesis inhibitory factor (IL-10) to the Epstein-Barr virus gene BCRFI

10.1126/science.2161559 · 1990 · External reference

Human cytomegalovirus harbors its own unique IL-10 homolog (cmvIL-10)

10.1073/pnas.97.4.1695 · 2000 · External reference

Kinetics of transcription of infectious laryngotracheitis virus genes

10.1016/j.cimid.2011.11.001 · 2012 · External reference

Characterization of the regulatory functions of the equine herpesvirus 1 immediate-early gene product

10.1128/jvi.66.2.936-945.1992 · 1992 · External reference

Practical approaches to long oligonucleotide-based DNA microarray: lessons from herpesviruses

10.1016/s0079-6603(02)71048-9 · 2002 · External reference

Genome-wide host responses against infectious laryngotracheitis virus vaccine infection in chicken embryo lung cells

10.1186/1471-2164-13-143 · 2012 · External reference

Transcriptional profiling of host gene expression in chicken embryo lung cells infected with laryngotracheitis virus

10.1186/1471-2164-11-445 · 2010 · External reference

Transcriptome analysis reveals an activation of major histocompatibility complex 1 and 2 pathways in chicken trachea immunized with infectious laryngotracheitis virus vaccine

10.3382/ps.2013-03624 · 2014 · External reference

Host Src controls gallid alpha herpesvirus 1 intercellular spread in a cellular fatty acid metabolism-dependent manner

10.1016/j.virol.2019.08.011 · 2019 · External reference

Long-Read Sequencing - A Powerful Tool in Viral Transcriptome Research

10.1016/j.tim.2019.01.010 · 2019 · External reference

PacBio Sequencing and Its Applications

10.1016/j.gpb.2015.08.002 · 2015 · External reference

Full-Length Isoform Sequencing Reveals Novel Transcripts and Substantial Transcriptional Overlaps in a Herpesvirus

10.1371/journal.pone.0162868 · 2016 · External reference

Hybrid sequencing discloses unique aspects of the transcriptomic architecture in equid alphaherpesvirus 1

10.1016/j.heliyon.2023.e17716 · 2023 · External reference

Exon structure conservation despite low sequence similarity: a relic of dramatic events in evolution?

10.1093/emboj/20.19.5354 · 2001 · External reference

Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements

10.1186/s12862-021-01935-1 · 2021 · External reference

Phylogenetic and molecular epidemiological studies reveal evidence of multiple past recombination events between infectious laryngotracheitis viruses

2013 · External reference

Discovery of the first PD-1 ligand encoded by a pathogen

10.3389/fimmu.2022.1007334 · 2022 · External reference

Infectious laryngotracheitis virus in chickens

10.5501/wjv.v1.i5.142 · 2012 · External reference

Molecular evolution of viruses; “trees”, “clocks” and “modules”

10.1242/jcs.1987.supplement_7.22 · 1987 · External reference

Commentary: IL-4 and IL-13 receptors and signaling

10.1016/j.cyto.2015.05.023 · 2015 · External reference

IL-4 stimulates the expression of CXCL-8, E-selectin, VEGF, and inducible nitric oxide synthase mRNA by equine pulmonary artery endothelial cells

10.1152/ajplung.00294.2006 · 2007 · External reference

Interleukin 4 induces the expression of inducible nitric oxide synthase in eosinophils

10.1016/j.cyto.2005.01.001 · 2005 · External reference

The initial response of CD4+ IL-4-producing cells

10.1093/intimm/dxl147 · 2007 · External reference

Dendritic cell-derived nitric oxide is involved in IL-4-induced suppression of experimental allergic encephalomyelitis (EAE) in Lewis rats

10.1046/j.1365-2249.1999.01029.x · 1999 · External reference

Virulence of infectious laryngotracheitis viruses: comparison of modified-live vaccine viruses and North Carolina field isolates

10.2307/1591340 · 1990 · External reference

Possible Mechanisms of Acquisition of Herpesvirus Virokines

10.1134/s0006297916110122 · 2016 · External reference

Marek’s disease virus (MDV) encodes an interleukin-8 homolog (vIL-8): characterization of the vIL-8 protein and a vIL-8 deletion mutant MDV

10.1128/jvi.75.11.5159-5173.2001 · 2001 · External reference

Cytokine homologs of human gammaherpesviruses

10.1089/jir.2011.0083 · 2012 · External reference

Virus-encoded homologs of cellular interleukin-10 and their control of host immune function

10.1128/jvi.01098-09 · 2009 · External reference

Isolation and expression of human cytokine synthesis inhibitory factor cDNA clones: homology to Epstein-Barr virus open reading frame BCRFI

10.1073/pnas.88.4.1172 · 1991 · External reference

Expression of interleukin-10 activity by Epstein-Barr virus protein BCRF1

10.1126/science.2173142 · 1990 · External reference

Effects of virally expressed interleukin-10 on vaccinia virus infection in mice

10.1128/jvi.67.12.7623-7628.1993 · 1993 · External reference

B-cell-derived IL-10: production and function

10.1006/meth.1996.0393 · 1997 · External reference

Epstein Barr Virus Interleukin 10 Suppresses Anti-inflammatory Phenotype in Human Monocytes

10.3389/fimmu.2018.02198 · 2018 · External reference

Human Cytomegalovirus Interleukin 10 Homologs: Facing the Immune System

10.3389/fcimb.2020.00245 · 2020 · External reference

Human cytomegalovirus suppresses type I interferon secretion by plasmacytoid dendritic cells through its interleukin 10 homolog

10.1016/j.virol.2009.05.013 · 2009 · External reference

The role of the human cytomegalovirus UL111A gene in down-regulating CD4+ T-cell recognition of latently infected cells: implications for virus elimination during latency

10.1182/blood-2008-12-197111 · 2009 · External reference

Identification of novel viral interleukin-10 isoforms of human cytomegalovirus AD169

10.1016/j.virusres.2007.09.011 · 2008 · External reference

The interleukin-17 gene of herpesvirus saimiri

10.1128/jvi.72.7.5797-5801.1998 · 1998 · External reference

IL-4: an important cytokine in determining the fate of T cells

10.1007/s12551-013-0133-z · 2014 · External reference

Comparison of Immune-Related Gene Expression in Two Chicken Breeds Following Infectious Bronchitis Virus Vaccination

10.3390/ani13101642 · 2023 · External reference

Evaluation of the expression of IFN-γ, IL-4, IL-17, and IL-22 cytokines in birds immunized with a recombinant chimeric vaccine containing alpha toxin, NetB, and ZMP against necrotic enteritis

2024 · External reference

Infectious laryngotracheitis herpesvirus expresses a related pair of unique nuclear proteins which are encoded by split genes located at the right end of the UL genome region

10.1128/jvi.72.8.6867-6874.1998 · 1998 · External reference

Topics in herpesvirus genomics and evolution

10.1016/j.virusres.2006.01.002 · 2006 · External reference

Intrahost speciations and host switches played an important role in the evolution of herpesviruses

10.1093/ve/veab025 · 2021 · External reference

Molecular and microscopic characterisation of a novel pathogenic herpesvirus from Indian ringneck parrots (Psittacula krameri)

10.1016/j.vetmic.2019.108428 · 2019 · External reference

Pathogenicity and growth characteristics of selected infectious laryngotracheitis virus strains from the United States

10.1080/03079450802632031 · 2009 · External reference

Replication and transmission of live attenuated infectious laryngotracheitis virus (ILTV) vaccines

10.1637/8011-041907-regr.1 · 2007 · External reference

Evaluation of the protection elicited by direct and indirect exposure to live attenuated infectious laryngotracheitis virus vaccines against a recent challenge strain from the United States

10.1080/03079450802043742 · 2008 · External reference

A simple method of estimating fifty percent endpoints

1938 · External reference

Bioconda: sustainable and comprehensive software distribution for the life sciences

10.1038/s41592-018-0046-7 · 2018 · External reference

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

10.1101/gr.222976.117 · 2018 · External reference

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

10.1093/bib/bbs017 · 2013 · External reference

Basic local alignment search tool

10.1016/s0022-2836(05)80360-2 · 1990 · External reference

Protein-to-genome alignment with miniprot

2023 · External reference

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

10.1186/1471-2105-7-62 · 2006 · External reference

JPred4: a protein secondary structure prediction server

10.1093/nar/gkv332 · 2015 · External reference

SignalP 6.0 predicts all five types of signal peptides using protein language models

10.1038/s41587-021-01156-3 · 2022 · External reference

Highly accurate protein structure prediction with AlphaFold

10.1038/s41586-021-03819-2 · 2021 · External reference

ColabFold: making protein folding accessible to all

10.1038/s41592-022-01488-1 · 2022 · External reference

Nextflow enables reproducible computational workflows

10.1038/nbt.3820 · 2017 · External reference

PDBsum1: A standalone program for generating PDBsum analyses

10.1002/pro.4473 · 2022 · External reference

MAFFT multiple sequence alignment software version 7: improvements in performance and usability

10.1093/molbev/mst010 · 2013 · External reference

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

10.1093/molbev/msaa015 · 2020 · External reference

ModelFinder: fast model selection for accurate phylogenetic estimates

10.1038/nmeth.4285 · 2017 · External reference

UFBoot2: Improving the Ultrafast Bootstrap Approximation

10.1093/molbev/msx281 · 2018 · External reference

A Novel Ultra-Stable, Monomeric Green Fluorescent Protein For Direct Volumetric Imaging of Whole Organs Using CLARITY

10.1038/s41598-017-18045-y · 2018 · External reference

Rapid protein-folding assay using green fluorescent protein

10.1038/10904 · 1999 · External reference

Expression of chicken parvovirus VP2 in chicken embryo fibroblasts requires codon optimization for production of naked DNA and vectored meleagrid herpesvirus type 1 vaccines

10.1007/s11262-013-0944-9 · 2013 · External reference

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9

10.1038/nbt.3437 · 2016 · External reference

Near-optimal probabilistic RNA-seq quantification

10.1038/nbt.3519 · 2016 · External reference

Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

10.1038/nmeth.2834 · 2014 · External reference

Viral proteogenomic and expression profiling during productive replication of a skin-tropic herpesvirus in the natural host

10.1371/journal.ppat.1011204 · 2023 · External reference

Ultrafast Peptide Label-Free Quantification with FlashLFQ

10.1021/acs.jproteome.7b00608 · 2018 · External reference

Molecular architecture of the chick vestibular hair bundle

10.1038/nn.3312 · 2013 · External reference

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

10.1038/s41587-019-0201-4 · 2019 · External reference

BEDTools: a flexible suite of utilities for comparing genomic features

10.1093/bioinformatics/btq033 · 2010 · External reference

Optimization of a duplex real-time PCR method for relative quantitation of infectious laryngotracheitis virus

10.1637/9883-081111-resnote.1 · 2012 · External reference

Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method

10.1006/meth.2001.1262 · 2001 · External reference

Unresolved reference

2016 · External reference

Visualizing Genomic Data Using Gviz and Bioconductor.

10.1007/978-1-4939-3578-9_16 · 2016 · External reference

Unresolved reference

External reference

Using ggtree to Visualize Data on Tree-Like Structures

2020 · External reference