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References from Discovery of functional factorless internal ribosome entry site-like structures through virome mining. Local targets link to admitted publications; unresolved targets remain external evidence.
A Cap-to-Tail Guide to mRNA Translation Strategies in Virus-Infected Cells
10.1146/annurev-virology-100114-055014 · 2016 · External reference
Viral internal ribosomal entry sites: four classes for one goal
10.1002/wrna.1458 · 2018 · External reference
Unresolved reference
2019 · External reference
A segment of the 5’ nontranslated region of encephalomyocarditis virus RNA directs internal entry of ribosomes during in vitro translation
10.1128/jvi.62.8.2636-2643.1988 · 1988 · External reference
Viral RNA structure-based strategies to manipulate translation
10.1038/s41579-018-0117-x · 2019 · External reference
An unusual internal ribosome entry site in the herpes simplex virus thymidine kinase gene
10.1073/pnas.0504132102 · 2005 · External reference
HIV-2 genomic RNA contains a novel type of IRES located downstream of its initiation codon
10.1038/nsmb1011 · 2005 · External reference
The leader of human immunodeficiency virus type 1 genomic RNA harbors an internal ribosome entry segment that is active during the G2/M phase of the cell cycle
10.1128/jvi.77.7.3939-3949.2003 · 2003 · External reference
Detection of an internal translation activity in the 5’ region of Bombyx mori infectious flacherie virus
10.1007/s00253-012-3996-1 · 2012 · External reference
The 5’ untranslated region of Perina nuda virus (PnV) possesses a strong internal translation activity in baculovirus-infected insect cells
10.1016/j.febslet.2007.05.070 · 2007 · External reference
Ectropis obliqua picorna-like virus IRES-driven internal initiation of translation in cell systems derived from different origins
10.1099/vir.0.83201-0 · 2007 · External reference
The 5’ non-translated region of Varroa destructor virus 1 (genus Iflavirus): structure prediction and IRES activity in Lymantria dispar cells
10.1099/vir.0.82122-0 · 2006 · External reference
The mechanism of translation initiation on Type 1 picornavirus IRESs
10.1002/embj.201386124 · 2014 · External reference
A distinct class of internal ribosomal entry site in members of the Kobuvirus and proposed Salivirus and Paraturdivirus genera of the Picornaviridae
10.1128/jvi.05862-11 · 2012 · External reference
The mechanism of translation initiation on Aichivirus RNA mediated by a novel type of picornavirus IRES
10.1038/emboj.2011.306 · 2011 · External reference
Activity of the hepatitis A virus IRES requires association between the cap-binding translation initiation factor (eIF4E) and eIF4G
10.1128/jvi.75.17.7854-7863.2001 · 2001 · External reference
Detailed analysis of the requirements of hepatitis A virus internal ribosome entry segment for the eukaryotic initiation factor complex eIF4F
10.1128/jvi.75.17.7864-7871.2001 · 2001 · External reference
A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs
10.1101/gad.12.1.67 · 1998 · External reference
Cryo-EM structure of Hepatitis C virus IRES bound to the human ribosome at 3.9-Å resolution
10.1038/ncomms8646 · 2015 · External reference
Horizontal gene transfer as a mechanism for the promiscuous acquisition of distinct classes of IRES by avian caliciviruses
10.1093/nar/gkab1243 · 2022 · External reference
Dissemination of Internal Ribosomal Entry Sites (IRES) Between Viruses by Horizontal Gene Transfer
10.3390/v12060612 · 2020 · External reference
A metagenomic survey of microbes in honey bee colony collapse disorder
10.1126/science.1146498 · 2007 · External reference
Taura syndrome, a disease important to shrimp farms in the Americas
10.1023/a:1018524216600 · 1997 · External reference
Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES
10.7554/elife.34062 · 2018 · External reference
Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus
10.1016/s0022-2836(02)01099-9 · 2002 · External reference
Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome
10.1016/j.cell.2014.04.015 · 2014 · External reference
Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center
10.1073/pnas.1406335111 · 2014 · External reference
Conserved element of the dicistrovirus IGR IRES that mimics an E-site tRNA/ribosome interaction mediates multiple functions
10.1016/j.jmb.2009.01.042 · 2009 · External reference
Structural basis for ribosome recruitment and manipulation by a viral IRES RNA
10.1126/science.1133281 · 2006 · External reference
Cryo-EM of ribosomal 80S complexes with termination factors reveals the translocated cricket paralysis virus IRES
10.1016/j.molcel.2014.12.016 · 2015 · External reference
Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome
10.7554/elife.14874 · 2016 · External reference
The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs
10.15252/embj.2019102226 · 2019 · External reference
Modular domains of the Dicistroviridae intergenic internal ribosome entry site
10.1261/rna.2044610 · 2010 · External reference
Translation initiation factors are not required for Dicistroviridae IRES function in vivo
10.1261/rna.1315109 · 2009 · External reference
Initiation of translation on nedicistrovirus and related intergenic region IRESs by their factor-independent binding to the P site of 80S ribosomes
10.1261/rna.079599.123 · 2023 · External reference
The structure and mechanism of action of a distinct class of dicistrovirus intergenic region IRESs
10.1093/nar/gkad569 · 2023 · External reference
The Halastavi árva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism
10.1016/j.celrep.2020.108476 · 2020 · External reference
Redefining the invertebrate RNA virosphere
10.1038/nature20167 · 2016 · External reference
Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome
10.1038/s41564-020-0755-4 · 2020 · External reference
Divergent RNA viruses infecting sea lice, major ectoparasites of fish
10.1371/journal.ppat.1011386 · 2023 · External reference
Petabase-scale sequence alignment catalyses viral discovery
10.1038/s41586-021-04332-2 · 2022 · External reference
Infernal 1.1: 100-fold faster RNA homology searches
10.1093/bioinformatics/btt509 · 2013 · External reference
Virome Analysis Provides an Insight into the Viral Community of Chinese Mitten Crab Eriocheir sinensis
2023 · External reference
Structure of the ribosome-bound cricket paralysis virus IRES RNA
10.1038/nsmb1177 · 2006 · External reference
Insights into factorless translational initiation by the tRNA-like pseudoknot domain of a viral IRES
2012 · External reference
A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation
10.7554/elife.08146 · 2015 · External reference
Mechanism and structural diversity of exoribonuclease-resistant RNA structures in flaviviral RNAs
10.1038/s41467-017-02604-y · 2018 · External reference
Global shape mimicry of tRNA within a viral internal ribosome entry site mediates translational reading frame selection
2015 · External reference
Initiation of protein synthesis from the A site of the ribosome
10.1016/s0092-8674(00)00055-6 · 2000 · External reference
Regulation of internal ribosomal entry site-mediated translation by phosphorylation of the translation initiation factor eIF2alpha
10.1074/jbc.m201052200 · 2002 · External reference
Alternative reading frame selection mediated by a tRNA-like domain of an internal ribosome entry site
2012 · External reference
IRES-dependent ribosome repositioning directs translation of a +1 overlapping ORF that enhances viral infection
10.1093/nar/gky1121 · 2018 · External reference
Unresolved reference
2018 · External reference
Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites
10.1128/mcb.20.14.4990-4999.2000 · 2000 · External reference
Initiation of protein synthesis by the eukaryotic translational apparatus on circular RNAs
10.1126/science.7536344 · 1995 · External reference
Cleavage efficient 2A peptides for high level monoclonal antibody expression in CHO cells
10.1080/19420862.2015.1008351 · 2015 · External reference
5’-3’ RNA-RNA interaction facilitates cap- and poly(A) tail-independent translation of tomato bushy stunt virus mrna: a potential common mechanism for tombusviridae
10.1074/jbc.m401272200 · 2004 · External reference
Guidelines for SHAPE Reagent Choice and Detection Strategy for RNA Structure Probing Studies
10.1021/acs.biochem.8b01218 · 2019 · External reference
Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures
10.1073/pnas.0906625106 · 2009 · External reference
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
10.1006/jmbi.1999.2700 · 1999 · External reference
Tying the knot: Unraveling the intricacies of the coronavirus frameshift pseudoknot
10.1371/journal.pcbi.1011787 · 2024 · External reference
Factor-Dependent Internal Ribosome Entry Site and -1 Programmed Frameshifting Signal in the Bemisia-Associated Dicistrovirus 2. Viruses.
2024 · External reference
In vivo functional analysis of the Dicistroviridae intergenic region internal ribosome entry sites
10.1093/nar/gkr427 · 2011 · External reference
Temporal Regulation of Distinct Internal Ribosome Entry Sites of the Dicistroviridae Cricket Paralysis Virus
10.3390/v8010025 · 2016 · External reference
Secretion and uptake of peroxidase by rat adenohypophyseal cells. J Ultrastruct Res
1973 · External reference
Two ribosome recruitment sites direct multiple translation events within HIV1 Gag open reading frame
10.1093/nar/gkx303 · 2017 · External reference
Quantifying the dynamics of IRES and cap translation with single-molecule resolution in live cells
10.1038/s41594-020-0504-7 · 2020 · External reference
Analysis of hepatitis C virus/classical swine fever virus chimeric 5’NTRs: sequences within the hepatitis C virus IRES are required for viral RNA replication
10.1099/vir.0.19063-0 · 2003 · External reference
Functional conservation despite structural divergence in ligand-responsive RNA switches
10.1073/pnas.1414678111 · 2014 · External reference
Unresolved reference
2018 · External reference
The 3’ Untranslated Region of a Plant Viral RNA Directs Efficient Cap-Independent Translation in Plant and Mammalian Systems.
10.3390/pathogens8010028 · 2019 · External reference
3’ cap-independent translation enhancers of plant viruses
10.1146/annurev-micro-092412-155609 · 2013 · External reference
Metatranscriptomic analysis uncovers prevalent viral ORFs compatible with mitochondrial translation
10.1128/msystems.01002-22 · 2023 · External reference
Hybrids of RNA viruses and viroid-like elements replicate in fungi
10.1038/s41467-023-38301-2 · 2023 · External reference
Functional viromic screens uncover regulatory RNA elements
2023 · External reference
Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs
2023 · External reference
Methods for studying IRES-mediated translation of positive-strand RNA viruses
10.1016/j.ymeth.2012.09.004 · 2013 · External reference
Biophysical characterisation of human LincRNA-p21 sense and antisense Alu inverted repeats
10.1093/nar/gkac414 · 2022 · External reference
Influence of nucleotide identity on ribose 2’-hydroxyl reactivity in RNA
10.1261/rna.1536209 · 2009 · External reference
Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2
10.1261/rna.061945.117 · 2018 · External reference
RNAstructure: software for RNA secondary structure prediction and analysis
10.1186/1471-2105-11-129 · 2010 · External reference
Beamline B21: high-throughput small-angle X-ray scattering at Diamond Light Source
10.1107/s1600577520009960 · 2020 · External reference
ATSAS 3.0: expanded functionality and new tools for small-angle scattering data analysis
10.1107/s1600576720013412 · 2021 · External reference
CHROMIXS: automatic and interactive analysis of chromatography-coupled small-angle X-ray scattering data
10.1093/bioinformatics/btx846 · 2018 · External reference
Guinier peak analysis for visual and automated inspection of small-angle X-ray scattering data
10.1107/s1600576716010906 · 2016 · External reference
Nucleic acid structure characterization by small angle X-ray scattering (SAXS)
2012 · External reference
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
10.1107/s0021889892001663 · 1992 · External reference
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
10.1016/s0006-3495(99)77443-6 · 1999 · External reference
Uniqueness of ab initio shape determination in small-angle scattering
2023 · External reference
SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction
10.1093/nar/gkv1479 · 2016 · External reference
UCSF ChimeraX: Tools for structure building and analysis
2023 · External reference
