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References from Identification and characterization of novel bat coronaviruses in Spain. Local targets link to admitted publications; unresolved targets remain external evidence.
Bat-borne virus diversity, spillover and emergence
10.1038/s41579-020-0394-z · 2020 · External reference
Bats: important reservoir hosts of emerging viruses
10.1128/cmr.00017-06 · 2006 · External reference
Henipavirus RNA in African bats
10.1371/journal.pone.0006367 · 2009 · External reference
Fruit bats as reservoirs of Ebola virus
10.1038/438575a · 2005 · External reference
Bats are natural reservoirs of SARS-like coronaviruses
10.1126/science.1118391 · 2005 · External reference
Further evidence for bats as the evolutionary source of middle east respiratory syndrome coronavirus
10.1128/mbio.00373-17 · 2017 · External reference
Bat origin of human coronaviruses
10.1186/s12985-015-0422-1 · 2015 · External reference
Viral zoonotic risk is homogenous among taxonomic orders of mammalian and avian reservoir hosts
10.1073/pnas.1919176117 · 2020 · External reference
Bats as a continuing source of emerging infections in humans
10.1002/rmv.520 · 2007 · External reference
Molecular detection of viruses in Kenyan bats and discovery of novel astroviruses, caliciviruses and rotaviruses
10.1007/s12250-016-3930-2 · 2017 · External reference
Coronavirus and paramyxovirus in bats from Northwest Italy
10.1186/s12917-017-1307-x · 2017 · External reference
Metagenomic identification of a new sarbecovirus from horseshoe bats in Europe
10.1038/s41598-021-94011-z · 2021 · External reference
Genomic screening of 16 UK native bat species through conservationist networks uncovers coronaviruses with zoonotic potential
2023 · External reference
Using Metagenomics to Characterize an Expanding Virosphere
10.1016/j.cell.2018.02.043 · 2018 · External reference
Novel Virus Identification through Metagenomics: A Systematic Review
2022 · External reference
Ecology, evolution and spillover of coronaviruses from bats
10.1038/s41579-021-00652-2 · 2022 · External reference
Origin and evolution of pathogenic coronaviruses
10.1038/s41579-018-0118-9 · 2019 · External reference
ICTV Virus Taxonomy Profile: Coronaviridae 2023
2023 · External reference
Independent infections of porcine deltacoronavirus among Haitian children
10.1038/s41586-021-04111-z · 2021 · External reference
Molecular epidemiology and genetic diversity of canine coronavirus from domestic dogs in Chengdu, China from 2020 to 2021 using a multiplex RT-PCR
2023 · External reference
Recombination, reservoirs, and the modular spike: mechanisms of coronavirus cross-species transmission
10.1128/jvi.01394-09 · 2010 · External reference
Bat coronaviruses related to SARS-CoV-2 and infectious for human cells
10.1038/s41586-022-04532-4 · 2022 · External reference
Receptor-binding proteins from animal viruses are broadly compatible with human cell entry factors
10.1038/s41564-024-01879-4 · 2025 · External reference
DBatVir: The database of bat-associated viruses
2014 · External reference
Detection of alpha and betacoronaviruses in multiple Iberian bat species
10.1007/s00705-011-1057-1 · 2011 · External reference
A study of viral pathogens in bat species in the Iberian Peninsula: identification of new coronavirus genetic variants
10.1080/23144599.2022.2139985 · 2022 · External reference
Phylogenetic evidence supporting the nonenveloped nature of hepadnavirus ancestors
10.1073/pnas.2415631121 · 2024 · External reference
Full-genome sequencing of dozens of new DNA viruses found in Spanish bat feces
2024 · External reference
Genetic diversity and cross-species transmissibility of bat-associated picornaviruses from Spain
10.1186/s12985-024-02456-1 · 2024 · External reference
CheckV assesses the quality and completeness of metagenome-assembled viral genomes
10.1038/s41587-020-00774-7 · 2021 · External reference
Los murciélagos (Mammalia: Chiroptera) de la Región de Murcia (SE España): distribución y estado de conservación
2011 · External reference
SARS-like Coronaviruses in Horseshoe Bats (Rhinolophus spp.) in Russia, 2020
10.3390/v14010113 · 2022 · External reference
Evolutionary Insights into the Ecology of Coronaviruses
10.1128/jvi.02605-06 · 2007 · External reference
Highly diverse ribonucleic acid viruses in the viromes of eukaryotic host species in Yunnan province, China
2022 · External reference
Full genome characterization of two novel Alpha-coronavirus species from Italian bats
10.1016/j.virusres.2018.11.007 · 2019 · External reference
Panoramic analysis of coronaviruses carried by representative bat species in Southern China to better understand the coronavirus sphere
10.1038/s41467-023-41264-z · 2023 · External reference
Complete genome sequence of a porcine epidemic diarrhea virus isolated in Belgorod, Russia, in 2008
10.1128/genomea.01026-17 · 2017 · External reference
Virus diversity, abundance, and evolution in three different bat colonies in Switzerland
10.3390/v14091911 · 2022 · External reference
Expanded ACE2 dependencies of diverse SARS-like coronavirus receptor binding domains
10.1371/journal.pbio.3001738 · 2022 · External reference
ACE2 binding is an ancestral and evolvable trait of sarbecoviruses
10.1038/s41586-022-04464-z · 2022 · External reference
Sarbecovirus RBD indels and specific residues dictating multi-species ACE2 adaptiveness
10.1038/s41467-024-53029-3 · 2024 · External reference
Cross-Species Transmission of Bat Coronaviruses in the Americas: Contrasting Patterns between Alphacoronavirus and Betacoronavirus
10.1128/spectrum.01411-22 · 2022 · External reference
Origin and cross-species transmission of bat coronaviruses in China
10.1038/s41467-020-17687-3 · 2020 · External reference
Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor
10.1038/s41586-020-2180-5 · 2020 · External reference
Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses
10.1016/j.cell.2021.06.008 · 2021 · External reference
Porcine aminopeptidase N is a functional receptor for the PEDV coronavirus
10.1016/j.virol.2007.03.031 · 2007 · External reference
Receptor usage and cell entry of porcine epidemic diarrhea coronavirus
10.1128/jvi.00430-15 · 2015 · External reference
Aminopeptidase N is not required for porcine epidemic diarrhea virus cell entry
10.1016/j.virusres.2017.03.018 · 2017 · External reference
Porcine aminopeptidase N is not a cellular receptor of porcine epidemic diarrhea virus, but promotes its infectivity via aminopeptidase activity
10.1099/jgv.0.000563 · 2016 · External reference
Aminopeptidase N Knockout Pigs Are Not Resistant to Porcine Epidemic Diarrhea Virus Infection
10.1007/s12250-019-00127-y · 2019 · External reference
fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
metaSPAdes: a new versatile metagenomic assembler
10.1101/gr.213959.116 · 2017 · External reference
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
10.1093/bioinformatics/btv033 · 2015 · External reference
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
10.1093/bioinformatics/btl158 · 2006 · External reference
Fast and sensitive taxonomic classification for metagenomics with Kaiju
2016 · External reference
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
2021 · External reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
InterProScan 5: genome-scale protein function classification
10.1093/bioinformatics/btu031 · 2014 · External reference
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
10.1186/s13059-018-1618-7 · 2019 · External reference
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
10.1038/msb.2011.75 · 2011 · External reference
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
10.1093/molbev/msaa015 · 2020 · External reference
ModelFinder: Fast model selection for accurate phylogenetic estimates
10.1038/nmeth.4285 · 2017 · External reference
UFBoot2: Improving the Ultrafast Bootstrap Approximation
10.1093/molbev/msx281 · 2018 · External reference
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
10.1093/sysbio/syq010 · 2010 · External reference
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
10.1093/nar/gkae268 · 2024 · External reference
Optimized Recovery of Viral DNA and RNA from Blood Plasma for Viral Metagenomics.
2024 · External reference
Genetic identification of bat species for pathogen surveillance across France
10.1371/journal.pone.0261344 · 2022 · External reference
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation
10.1371/journal.ppat.1010631 · 2022 · External reference