Research graph
References from Common Fusion Transcripts Identified in Colorectal Cancer Cell Lines by High-Throughput RNA Sequencing. Local targets link to admitted publications; unresolved targets remain external evidence.
Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008
10.1002/ijc.25516 · 2010 · External reference
Molecular profiling of colon tumors: the search for clinically relevant biomarkers of progression, prognosis, therapeutics, and predisposition
10.1245/s10434-011-1615-5 · 2011 · External reference
The molecular therapy of colorectal cancer
10.1016/j.mam.2010.02.005 · 2010 · External reference
Alternative splicing in cancer: noise, functional, or systematic
10.1016/j.biocel.2007.02.016 · 2007 · External reference
Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer
10.1126/science.1117679 · 2005 · External reference
Recurrent gene fusions in prostate cancer
10.1038/nrc2402 · 2008 · External reference
FLI1 is a novel ETS transcription factor involved in gene fusions in prostate cancer
10.1002/gcc.20948 · 2012 · External reference
Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma
10.1038/nm.2166 · 2010 · External reference
SLC45A3-ELK4 is a novel and frequent erythroblast transformation-specific fusion transcript in prostate cancer
10.1158/0008-5472.can-08-4926 · 2009 · External reference
Novel 5′ fusion partners of ETV1 and ETV4 in prostate cancer
10.1593/neo.13232 · 2013 · External reference
Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer
10.1038/nature05945 · 2007 · External reference
KIF5B-ALK, a novel fusion oncokinase identified by an immunohistochemistry-based diagnostic system for ALK-positive lung cancer
10.1158/1078-0432.ccr-08-3248 · 2009 · External reference
Identification of new ALK and RET gene fusions from colorectal and lung cancer biopsies
10.1038/nm.2673 · 2012 · External reference
RET, ROS1 and ALK fusions in lung cancer
10.1038/nm.2658 · 2012 · External reference
Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancer
10.1038/nm.2580 · 2011 · External reference
Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion
10.1038/ng.936 · 2011 · External reference
Recurrent R-spondin fusions in colon cancer
10.1038/nature11282 · 2012 · External reference
Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples
10.1186/1755-8794-4-11 · 2011 · External reference
Chimeric transcript generated by cis-splicing of adjacent genes regulates prostate cancer cell proliferation
10.1158/2159-8290.cd-12-0042 · 2012 · External reference
Evidence for transcript networks composed of chimeric RNAs in human cells
10.1371/journal.pone.0028213 · 2012 · External reference
Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts
10.1101/gr.130062.111 · 2012 · External reference
Long-range transcriptome sequencing reveals cancer cell growth regulatory chimeric mRNA
10.1593/neo.121342 · 2012 · External reference
Landscape of transcription in human cells
10.1038/nature11233 · 2012 · External reference
A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells
10.1126/science.1156725 · 2008 · External reference
Genome signatures of colon carcinoma cell lines
10.1016/j.cancergencyto.2004.03.014 · 2004 · External reference
Genetic tumor markers with prognostic impact in Dukes' stages B and C colorectal cancer patients
10.1200/jco.2003.05.190 · 2003 · External reference
DNA sequence profiles of the colorectal cancer critical gene set KRAS-BRAF-PIK3CA-PTEN-TP53 related to age at disease onset
10.1371/journal.pone.0013978 · 2010 · External reference
Transcriptome instability in colorectal cancer identified by exon microarray analyses: associations with splicing factor expression levels and patient survival
10.1186/gm248 · 2011 · External reference
deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data
10.1371/journal.pcbi.1001138 · 2011 · External reference
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
10.1038/nbt.1621 · 2010 · External reference
TopHat: discovering splice junctions with RNA-Seq
10.1093/bioinformatics/btp120 · 2009 · External reference
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
10.1186/gb-2009-10-3-r25 · 2009 · External reference
Unresolved reference
2009 · External reference
GenomeGraphs: integrated genomic data visualization with R
10.1186/1471-2105-10-2 · 2009 · External reference
Bioconductor: open software development for computational biology and bioinformatics
10.1186/gb-2004-5-10-r80 · 2004 · External reference
Primer3 on the WWW for general users and for biologist programmers
2000 · External reference
Fast and accurate short read alignment with Burrows-Wheeler transform
10.1093/bioinformatics/btp324 · 2009 · External reference
Integrative genomics viewer
10.1038/nbt.1754 · 2011 · External reference
nFuse: discovery of complex genomic rearrangements in cancer using high-throughput sequencing
10.1101/gr.136572.111 · 2012 · External reference
Isolation and characterization of PDE8A, a novel human cAMP-specific phosphodiesterase
10.1006/bbrc.1998.8684 · 1998 · External reference
Human phosphodiesterase 8A splice variants: cloning, gene organization, and tissue distribution
10.1016/s0378-1119(01)00783-1 · 2001 · External reference
AKAP-Lbc anchors protein kinase A and nucleates Gα12-selective Rho-mediated stress fiber formation
10.1074/jbc.m106629200 · 2001 · External reference
COMMD proteins, a novel family of structural and functional homologs of MURR1
10.1074/jbc.m501928200 · 2005 · External reference
Characterization of the adaptor-related protein complex, AP-3
10.1083/jcb.137.4.835 · 1997 · External reference
Characterization of the interactome of the human MutL homologues MLH1, PMS1, and PMS2
10.1074/jbc.m609989200 · 2007 · External reference
