Research graph
References from Comparative genomics of bat endogenous retroviruses: abundance and coding integrity are decoupled, and de novo detection can counterfeit a lineage-specific expansion. Local targets link to admitted publications; unresolved targets remain external evidence.
Origins and evolutionary consequences of ancient endogenous retroviruses
10.1038/s41579-019-0189-2 · 2019 · External reference
Endogenous viruses: insights into viral evolution and impact on host biology
10.1038/nrg3199 · 2012 · External reference
A molecular phylogeny for bats illuminates biogeography and the fossil record
10.1126/science.1105113 · 2005 · External reference
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Lessons from the host defences of bats, a unique viral reservoir
10.1038/s41586-020-03128-0 · 2021 · External reference
Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae)
10.1073/pnas.1621224114 · 2017 · External reference
Remnants of an ancient Deltaretrovirus in the genomes of horseshoe bats (Rhinolophidae)
10.3390/v10040185 · 2018 · External reference
Loss of LINE-1 activity in the megabats
10.1534/genetics.107.080275 · 2008 · External reference
Six reference-quality genomes reveal evolution of bat adaptations
10.1038/s41586-020-2486-3 · 2020 · External reference
Identification of diverse full-length endogenous betaretroviruses in megabats and microbats
10.1186/1742-4690-10-35 · 2013 · External reference
Genome-wide characterization of endogenous retroviruses in the bat Myotis lucifugus reveals recent and diverse infections
10.1128/jvi.00892-13 · 2013 · External reference
BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes
10.1093/molbev/msab199 · 2021 · External reference
UFBoot2: improving the ultrafast bootstrap approximation
10.1093/molbev/msx281 · 2018 · External reference
IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era
10.1093/molbev/msaa015 · 2020 · External reference
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
10.1186/1471-2105-9-18 · 2008 · External reference
Pfam: the protein families database in 2021
10.1093/nar/gkaa913 · 2021 · External reference
BLAST+: architecture and applications
10.1186/1471-2105-10-421 · 2009 · External reference
Mathematical contributions to the theory of evolution.—On a form of spurious correlation which may arise when indices are used in the measurement of organs
10.1098/rspl.1896.0076 · 1897 · External reference
The genome sizes of megabats (Chiroptera: Pteropodidae) are remarkably constrained
10.1098/rsbl.2009.0016 · 2009 · External reference
Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera
10.1093/dnares/dsaa021 · 2020 · External reference
Accounting for diverse transposable element landscapes is key to developing and evaluating accurate de novo annotation strategies
10.1186/s13059-023-03118-1 · 2024 · External reference
Earl Grey: a fully automated user-friendly transposable element annotation and analysis pipeline
10.1093/molbev/msae068 · 2024 · External reference
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
10.1186/s13059-019-1905-y · 2019 · External reference
Remarkably high repeat content in the genomes of sparrows: the importance of genome assembly completeness for transposable element discovery
10.1093/gbe/evae067 · 2024 · External reference
Footprint of APOBEC3 on the genome of human retroelements
10.1128/jvi.00298-13 · 2013 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
10.1093/molbev/mst010 · 2013 · External reference
GenomeTools: a comprehensive software library for efficient processing of structured genome annotations
10.1109/tcbb.2013.68 · 2013 · External reference
Accelerated profile HMM searches
10.1371/journal.pcbi.1002195 · 2011 · External reference
caper: comparative analyses of phylogenetics and evolution in R. R package version 1.0.1
2018 · External reference
phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)
10.7717/peerj.16505 · 2024 · External reference
Mutation rates in mammalian genomes
10.1073/pnas.022629899 · 2002 · External reference
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
10.1093/bioinformatics/btp348 · 2009 · External reference
Unresolved reference
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Unresolved reference
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