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References from Chromosome-resolved genome of Magnaporthe oryzae KJ201 links East Asian rice blast lineage architecture with pathogenicity loci. Local targets link to admitted publications; unresolved targets remain external evidence.
On the trail of a cereal killer: exploring the biology of Magnaporthe grisea
10.1146/annurev.micro.57.030502.090957 · 2003 · External reference
Under pressure: investigating the biology of plant infection by Magnaporthe oryzae
10.1038/nrmicro2032 · 2009 · External reference
Rise of a cereal killer: the biology of Magnaporthe oryzae biotrophic growth
10.1016/j.tim.2017.12.007 · 2018 · External reference
Pyricularia oryzae: Lab star and field scourge
10.1111/mpp.13449 · 2024 · External reference
Changes in the occurrence patterns of rice fungal diseases due to climate change
10.5423/rpd.2025.31.1.17 · 2025 · External reference
The genome sequence of the rice blast fungus Magnaporthe grisea
10.1038/nature03449 · 2005 · External reference
Genome analysis of rice-blast fungus Magnaporthe oryzae field isolates from southern India
10.1016/j.gdata.2015.06.018 · 2015 · External reference
Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements
10.1186/s12864-016-2690-6 · 2016 · External reference
Unresolved reference
2019 · External reference
Blast fungal genomes show frequent chromosomal changes, gene gains and losses, and effector gene turnover
10.1093/molbev/msz045 · 2019 · External reference
Transposon-mediated telomere destabilization: a driver of genome evolution in the blast fungus
2020 · External reference
Horizontally transferred DNA in the genome of the fungus Pyricularia oryzae is associated with repressive histone modifications
10.1093/molbev/msad186 · 2023 · External reference
Rapid mini-chromosome divergence among fungal isolates causing wheat blast outbreaks in Bangladesh and Zambia
10.1111/nph.19402 · 2024 · External reference
Rice blast fungus (Magnaporthe oryzae) infects Arabidopsis via a mechanism distinct from that required for the infection of rice
10.1104/pp.108.129536 · 2009 · External reference
Identification and analysis of in planta expressed genes of Magnaporthe oryzae
10.1186/1471-2164-11-104 · 2010 · External reference
Global expression profiling of transcription factor genes provides new insights into pathogenicity and stress responses in the rice blast fungus
10.1371/journal.ppat.1003350 · 2013 · External reference
Homeobox transcription factors are required for conidiation and appressorium development in the rice blast fungus Magnaporthe oryzae
10.1371/journal.pgen.1000757 · 2009 · External reference
Unresolved reference
2015 · External reference
Systematic characterization of the peroxidase gene family provides new insights into fungal pathogenicity in Magnaporthe oryzae
10.1038/srep11831 · 2015 · External reference
Genome-wide profiling of DNA methylation provides insights into epigenetic regulation of fungal development in a plant pathogenic fungus, Magnaporthe oryzae
10.1038/srep08567 · 2015 · External reference
Transcriptome profiling of the rice blast fungus Magnaporthe oryzae and its host Oryza sativa during infection. Mol
10.1094/mpmi-07-19-0207-a · 2020 · External reference
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection
10.1080/15476286.2022.2043040 · 2022 · External reference
Genome-wide functional analysis of pathogenicity genes in the rice blast fungus
10.1038/ng2002 · 2007 · External reference
Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants
10.1093/gbe/evv187 · 2015 · External reference
Coexistence of multiple endemic and pandemic lineages of the rice blast pathogen
10.1128/mbio.01806-17 · 2018 · External reference
First telomere-to-telomere gapless assembly of the rice blast fungus Pyricularia oryzae
10.1038/s41597-024-03209-z · 2024 · External reference
An annotated near-complete sequence assembly of the Magnaporthe oryzae 70 – 15 reference genome
10.1038/s41597-025-05116-3 · 2025 · External reference
The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae
10.1186/gb-2006-7-2-r16 · 2006 · External reference
Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species
10.1371/journal.ppat.1002147 · 2011 · External reference
Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus
10.1371/journal.pgen.1008272 · 2019 · External reference
Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus
10.1371/journal.pgen.1009386 · 2021 · External reference
Highly dynamic supernumerary mini-chromosomes in a Magnaporthe oryzae strain contributes to cellular variance of genomic content
10.1016/j.fgb.2025.104020 · 2025 · External reference
Transposable elements create distinct genomic niches for effector evolution among Magnaporthe oryzae lineages
10.1186/s12915-025-02385-7 · 2025 · External reference
Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae
10.1371/journal.pgen.1009376 · 2021 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
10.1038/s41592-020-01056-5 · 2021 · External reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
Identifying and removing haplotypic duplication in primary genome assemblies
10.1093/bioinformatics/btaa025 · 2020 · External reference
SeqKit2: A Swiss army knife for sequence and alignment processing
10.1002/imt2.191 · 2024 · External reference
fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Unresolved reference
2013 · External reference
Unresolved reference
2021 · External reference
YaHS: yet another Hi-C scaffolding tool
10.1093/bioinformatics/btac808 · 2023 · External reference
Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom
10.1016/j.cels.2015.07.012 · 2016 · External reference
BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes
10.1093/molbev/msab199 · 2021 · External reference
Unresolved reference
2020 · External reference
Unresolved reference
2009 · External reference
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA
10.1101/gr.278090.123 · 2024 · External reference
Predicting genes in single genomes with AUGUSTUS
10.1002/cpbi.57 · 2019 · External reference
EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
10.1094/mpmi-08-21-0201-r · 2022 · External reference
SignalP 6.0 predicts all five types of signal peptides using protein language models
10.1038/s41587-021-01156-3 · 2022 · External reference
dbCAN3: automated carbohydrate-active enzyme and substrate annotation
10.1093/nar/gkad328 · 2023 · External reference
OrthoFinder: improved phylogenetic orthology inference with enhanced accuracy and scalability
10.1038/s41592-026-03126-6 · 2026 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
10.1093/molbev/mst010 · 2013 · External reference
IQ-TREE 3: phylogenomic inference software using complex evolutionary models
10.1093/molbev/msag117 · 2026 · External reference
10.1101/2022.04.22.489119
10.1101/2022.04.22.489119 · 2022 · External reference
Versatile and open software for comparing large genomes
10.1186/gb-2004-5-2-r12 · 2004 · External reference
Sensitive protein alignments at tree-of-life scale using DIAMOND
10.1038/s41592-021-01101-x · 2021 · External reference
10.64898/2026.05.11.724438
10.64898/2026.05.11.724438 · 2026 · External reference
10.1101/2023.08.30.555587
10.1101/2023.08.30.555587 · 2023 · External reference
Predicting genes in single genomes with AUGUSTUS
10.1002/cpbi.57 · ExternalCitation · doi-reference
SeqKit2: A Swiss army knife for sequence and alignment processing
10.1002/imt2.191 · ExternalCitation · doi-reference
Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom
10.1016/j.cels.2015.07.012 · ExternalCitation · doi-reference
Highly dynamic supernumerary mini-chromosomes in a Magnaporthe oryzae strain contributes to cellular variance of genomic content
10.1016/j.fgb.2025.104020 · ExternalCitation · doi-reference
Genome analysis of rice-blast fungus Magnaporthe oryzae field isolates from southern India
10.1016/j.gdata.2015.06.018 · ExternalCitation · doi-reference
Rise of a cereal killer: the biology of Magnaporthe oryzae biotrophic growth
10.1016/j.tim.2017.12.007 · ExternalCitation · doi-reference
The genome sequence of the rice blast fungus Magnaporthe grisea
10.1038/nature03449 · ExternalCitation · doi-reference
Genome-wide functional analysis of pathogenicity genes in the rice blast fungus
10.1038/ng2002 · ExternalCitation · doi-reference
Under pressure: investigating the biology of plant infection by Magnaporthe oryzae
10.1038/nrmicro2032 · ExternalCitation · doi-reference
SignalP 6.0 predicts all five types of signal peptides using protein language models
10.1038/s41587-021-01156-3 · ExternalCitation · doi-reference
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
10.1038/s41592-020-01056-5 · ExternalCitation · doi-reference
Sensitive protein alignments at tree-of-life scale using DIAMOND
10.1038/s41592-021-01101-x · ExternalCitation · doi-reference
OrthoFinder: improved phylogenetic orthology inference with enhanced accuracy and scalability
10.1038/s41592-026-03126-6 · ExternalCitation · doi-reference
First telomere-to-telomere gapless assembly of the rice blast fungus Pyricularia oryzae
10.1038/s41597-024-03209-z · ExternalCitation · doi-reference
An annotated near-complete sequence assembly of the Magnaporthe oryzae 70 – 15 reference genome
10.1038/s41597-025-05116-3 · ExternalCitation · doi-reference
Genome-wide profiling of DNA methylation provides insights into epigenetic regulation of fungal development in a plant pathogenic fungus, Magnaporthe oryzae
10.1038/srep08567 · ExternalCitation · doi-reference
Systematic characterization of the peroxidase gene family provides new insights into fungal pathogenicity in Magnaporthe oryzae
10.1038/srep11831 · ExternalCitation · doi-reference
Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection
10.1080/15476286.2022.2043040 · ExternalCitation · doi-reference
Identifying and removing haplotypic duplication in primary genome assemblies
10.1093/bioinformatics/btaa025 · ExternalCitation · doi-reference
YaHS: yet another Hi-C scaffolding tool
10.1093/bioinformatics/btac808 · ExternalCitation · doi-reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · ExternalCitation · doi-reference
fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · ExternalCitation · doi-reference
Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants
10.1093/gbe/evv187 · ExternalCitation · doi-reference
BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes
10.1093/molbev/msab199 · ExternalCitation · doi-reference
Horizontally transferred DNA in the genome of the fungus Pyricularia oryzae is associated with repressive histone modifications
10.1093/molbev/msad186 · ExternalCitation · doi-reference
IQ-TREE 3: phylogenomic inference software using complex evolutionary models
10.1093/molbev/msag117 · ExternalCitation · doi-reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
10.1093/molbev/mst010 · ExternalCitation · doi-reference
Blast fungal genomes show frequent chromosomal changes, gene gains and losses, and effector gene turnover
10.1093/molbev/msz045 · ExternalCitation · doi-reference
dbCAN3: automated carbohydrate-active enzyme and substrate annotation
10.1093/nar/gkad328 · ExternalCitation · doi-reference
Transcriptome profiling of the rice blast fungus Magnaporthe oryzae and its host Oryza sativa during infection. Mol
10.1094/mpmi-07-19-0207-a · ExternalCitation · doi-reference
EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
10.1094/mpmi-08-21-0201-r · ExternalCitation · doi-reference
10.1101/2022.04.22.489119
10.1101/2022.04.22.489119 · ExternalCitation · doi-reference
10.1101/2023.08.30.555587
10.1101/2023.08.30.555587 · ExternalCitation · doi-reference
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA
10.1101/gr.278090.123 · ExternalCitation · doi-reference
Rice blast fungus (Magnaporthe oryzae) infects Arabidopsis via a mechanism distinct from that required for the infection of rice
10.1104/pp.108.129536 · ExternalCitation · doi-reference
Pyricularia oryzae: Lab star and field scourge
10.1111/mpp.13449 · ExternalCitation · doi-reference
Rapid mini-chromosome divergence among fungal isolates causing wheat blast outbreaks in Bangladesh and Zambia
10.1111/nph.19402 · ExternalCitation · doi-reference
Coexistence of multiple endemic and pandemic lineages of the rice blast pathogen
10.1128/mbio.01806-17 · ExternalCitation · doi-reference
On the trail of a cereal killer: exploring the biology of Magnaporthe grisea
10.1146/annurev.micro.57.030502.090957 · ExternalCitation · doi-reference
Identification and analysis of in planta expressed genes of Magnaporthe oryzae
10.1186/1471-2164-11-104 · ExternalCitation · doi-reference
Versatile and open software for comparing large genomes
10.1186/gb-2004-5-2-r12 · ExternalCitation · doi-reference
The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae
10.1186/gb-2006-7-2-r16 · ExternalCitation · doi-reference
Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements
10.1186/s12864-016-2690-6 · ExternalCitation · doi-reference
Transposable elements create distinct genomic niches for effector evolution among Magnaporthe oryzae lineages
10.1186/s12915-025-02385-7 · ExternalCitation · doi-reference
Homeobox transcription factors are required for conidiation and appressorium development in the rice blast fungus Magnaporthe oryzae
10.1371/journal.pgen.1000757 · ExternalCitation · doi-reference
Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus
10.1371/journal.pgen.1008272 · ExternalCitation · doi-reference
Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae
10.1371/journal.pgen.1009376 · ExternalCitation · doi-reference
Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus
10.1371/journal.pgen.1009386 · ExternalCitation · doi-reference
Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species
10.1371/journal.ppat.1002147 · ExternalCitation · doi-reference
Global expression profiling of transcription factor genes provides new insights into pathogenicity and stress responses in the rice blast fungus
10.1371/journal.ppat.1003350 · ExternalCitation · doi-reference
Changes in the occurrence patterns of rice fungal diseases due to climate change
10.5423/rpd.2025.31.1.17 · ExternalCitation · doi-reference
10.64898/2026.05.11.724438
10.64898/2026.05.11.724438 · ExternalCitation · doi-reference
