Research graph
References from Identification and Functional Insights on Tissue- and Condition-Specific Long Non-Coding RNAs in Drosophila melanogaster. Local targets link to admitted publications; unresolved targets remain external evidence.
Unresolved reference
2022 · External reference
Triplexator: Detecting nucleic acid triple helices in genomic and transcriptomic data
10.1101/gr.130237.111 · 2012 · External reference
Unresolved reference
2018 · External reference
Essential role of phosphoinositide metabolism in synaptic vesicle recycling
10.1016/s0092-8674(00)81649-9 · 1999 · External reference
Cinderella of genetics (Drosophila melanogaster): Population genetics to genomics
2021 · External reference
Amalgam is a ligand for the transmembrane receptor neurotactin and is required for neurotactin-mediated cell adhesion and axon fasciculation in Drosophila
10.1093/emboj/19.17.4463 · 2000 · External reference
Tipin, a novel timeless-interacting protein, is developmentally co-expressed with timeless and disrupts its self-association
10.1016/s0022-2836(03)00633-8 · 2003 · External reference
Unresolved reference
2017 · External reference
Unresolved reference
2019 · External reference
Developmental expression analysis of the 1731 retrotransposon reveals an enhancement of Gag–Pol frameshifting in males of Drosophila melanogaster
10.1016/s0378-1119(97)00203-5 · 1997 · External reference
Mutations in synaptojanin disrupt synaptic vesicle recycling
10.1083/jcb.150.3.589 · 2000 · External reference
Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species
10.1016/j.celrep.2015.04.023 · 2015 · External reference
Long non-coding RNAs (lncRNAs) in spermatogenesis and male infertility
2020 · External reference
Structural and functional diversity of EF-hand proteins: Evolutionary perspectives
10.1002/pro.3233 · 2017 · External reference
A putative lysozyme and serine carboxypeptidase from Heterorhabditis bacteriophora show differential virulence capacities in Drosophila melanogaster
10.1016/j.dci.2020.103820 · 2021 · External reference
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
10.1038/s41587-019-0201-4 · 2019 · External reference
WGCNA: An R package for weighted correlation network analysis
10.1186/1471-2105-9-559 · 2008 · External reference
FlyAtlas 2: A new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
10.1093/nar/gkx976 · 2018 · External reference
The Sequence Alignment/Map format and SAMtools
10.1093/bioinformatics/btp352 · 2009 · External reference
Insights into the functions of LncRNAs in drosophila
2019 · External reference
FeatureCounts: An efficient general purpose program for assigning sequence reads to genomic features
10.1093/bioinformatics/btt656 · 2014 · External reference
Integrated analysis of long non-coding RNAs and mRNAs reveals the regulatory network of maize seedling root responding to salt stress
10.1186/s12864-021-08286-7 · 2022 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
Capsid transfer of the retrotransposon Copia controls structural synaptic plasticity in Drosophila
10.1371/journal.pbio.3002983 · 2025 · External reference
Long non-coding RNAs: definitions, functions, challenges and recommendations
10.1038/s41580-022-00566-8 · 2023 · External reference
A presynaptic inositol-5-phosphatase
10.1038/379353a0 · 1996 · External reference
Identification of novel regulators of atonal expression in the developing Drosophila retina
10.1534/genetics.108.093302 · 2008 · External reference
jockey, a mobile drosophila element similar to mammalian LINEs, is transcribed from the internal promoter by RNA polymerase II
10.1016/s0092-8674(88)80013-8 · 1988 · External reference
LncRAnalyzer: a robust workflow for long non-coding RNA discovery using RNA-Seq
10.1111/tpj.70509 · 2025 · External reference
GFF Utilities: GffRead and GffCompare
10.12688/f1000research.23297.2 · 2020 · External reference
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
10.1038/nbt.3122 · 2015 · External reference
Small Glutamine-Rich Tetratricopeptide Repeat-Containing Protein Alpha (SGTA) Ablation Limits Offspring Viability and Growth in Mice
10.1038/srep28950 · 2016 · External reference
Frequenin—A novel calcium-binding protein that modulates synaptic efficacy in the drosophila nervous system
10.1016/0896-6273(93)90267-u · 1993 · External reference
The Pfam protein families database
10.1093/nar/gkr1065 · 2012 · External reference
Thimet Oligopeptidase (EC 3.4.24.15) Key Functions Suggested by Knockout Mice Phenotype Characterization
10.3390/biom9080382 · 2019 · External reference
The de novo transcriptome and its functional annotation in the seed beetle callosobruchus maculatus
10.1371/journal.pone.0158565 · 2016 · External reference
Regulators of alternative polyadenylation operate at the transition from mitosis to meiosis
10.1016/j.jgg.2016.12.007 · 2017 · External reference
Roles of lncRNAs in brain development and pathogenesis: emerging therapeutic opportunities
10.1016/j.ymthe.2023.02.008 · 2023 · External reference
Gene regulation by long non-coding RNAs and its biological functions
2021 · External reference
S-adenosyl-methionine-dependent methyltransferases: highly versatile enzymes in biocatalysis, biosynthesis and other biotechnological applications
10.1002/cbic.201200556 · 2012 · External reference
Functional differences between Ultrabithorax protein isoforms in Drosophila melanogaster: evidence from elimination, substitution and ectopic expression of specific isoforms
10.1093/genetics/136.3.979 · 1994 · External reference
Genome-wide identification and characterization of long non-coding RNAs expressed during sheep fetal and postnatal hair follicle development
10.1038/s41598-019-44600-w · 2019 · External reference
Plant-LncPipe: a computational pipeline providing significant improvement in plant lncRNA identification
10.1093/hr/uhae041 · 2024 · External reference
scully, an Essential Gene of Drosophila, is Homologous to Mammalian Mitochondrial Type II l-3-hydroxyacyl-CoA Dehydrogenase/Amyloid-β Peptide-binding Protein
10.1083/jcb.141.4.1009 · 1998 · External reference
The X element, a novel LINE transposable element from Drosophila melanogaster
10.1007/s004380000437 · 2001 · External reference
Analysis of Drosophila melanogaster testis transcriptome
10.1186/s12864-018-5085-z · 2018 · External reference
Synaptojanin is recruited by endophilin to promote synaptic vesicle uncoating
10.1016/s0896-6273(03)00644-5 · 2003 · External reference
Functions and regulatory mechanisms of lncRNAs in skeletal myogenesis, muscle disease and meat production
10.3390/cells8091107 · 2019 · External reference
Functions of N-Glycosylation-Related Endoplasmic Reticulum Proteins in the Development and Virulence of Plant Pathogens
10.3390/jof11110791 · 2025 · External reference
RNA kinase CLP1/Cbc regulates meiosis initiation in spermatogenesis
10.1093/hmg/ddab107 · 2021 · External reference
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
10.1016/j.xinn.2021.100141 · External reference
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
10.1093/bioinformatics/bti042 · 2005 · External reference
Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors
10.1073/pnas.1500605112 · 2015 · External reference
Arginine Kinase 1 regulates energy homeostasis in Drosophila muscle development
10.64898/2026.01.30.702107 · 2026 · External reference
A profile hidden Markov model for signal peptides generated by HMMER
10.1093/bioinformatics/19.2.307 · 2003 · External reference
