Research graph
References from Decoding early-life gut microbiota: discrete and reproducible maturation stages in broiler chickens. Local targets link to admitted publications; unresolved targets remain external evidence.
Managing Gut Microbiota through In Ovo Nutrition Influences Early-Life Programming in Broiler Chickens
10.3390/ani11123491 · 2021 · External reference
Recent advances in the application of microbiota transplantation in chickens
10.1186/s40104-025-01233-6 · 2025 · External reference
Uncovering the core principles of the gut-lung axis to enhance innate immunity in the chicken
10.3389/fimmu.2022.956670 · 2022 · External reference
State of the art in research on the gut-liver and gut-brain axis in poultry
10.1186/s40104-023-00853-0 · 2023 · External reference
Emerging perspectives in the gut–muscle axis: The gut microbiota and its metabolites as important modulators of meat quality
10.1111/1751-7915.14361 · 2024 · External reference
The chicken gut microbiome in conventional and alternative production systems
10.1186/s40104-025-01293-8 · 2025 · External reference
Successional Stages in Infant Gut Microbiota Maturation
10.1128/mbio.01857-21 · 2021 · External reference
The Resemblance between Bacterial Gut Colonization in Pigs and Humans
10.3390/microorganisms10091831 · 2022 · External reference
Early-life gut microbiota assembly patterns are conserved between laboratory and wild mice
10.1038/s42003-024-07039-y · 2024 · External reference
Neonatal Calf Diarrhea and Gastrointestinal Microbiota: Etiologic Agents and Microbiota Manipulation for Treatment and Prevention of Diarrhea
10.3390/vetsci11030108 · 2024 · External reference
Valid publication of the names of forty-two phyla of prokaryotes
10.1099/ijsem.0.005056 · 2021 · External reference
Distinct Stage Changes in Early-Life Colonization and Acquisition of the Gut Microbiota and Its Correlations With Volatile Fatty Acids in Goat Kids
10.3389/fmicb.2020.584742 · 2020 · External reference
Gut microbiota development in the growing dog: A dynamic process influenced by maternal, environmental and host factors
10.3389/fvets.2022.964649 · 2022 · External reference
Spatial and Temporal Variation of the Intestinal Bacterial Community in Commercially Raised Broiler Chickens During Growth
10.1007/s00248-002-2015-y · 2002 · External reference
Development of the Chick Microbiome: How Early Exposure Influences Future Microbial Diversity
10.3389/fvets.2016.00002 · 2016 · External reference
Development of the Caecal Microbiota in Three Broiler Breeds
10.3389/fvets.2019.00201 · 2019 · External reference
16S rRNA amplicon sequencing characterization of caecal microbiome composition of broilers and free-range slow-growing chickens throughout their productive lifespan
10.1038/s41598-019-39323-x · 2019 · External reference
Cecal Microbial Succession and Its Apparent Association with Nutrient Metabolism in Broiler Chickens
10.1128/msphere.00614-22 · 2023 · External reference
Patterns of community assembly in the developing chicken microbiome reveal rapid primary succession
10.1002/mbo3.821 · 2019 · External reference
Mining chicken ileal microbiota for immunomodulatory microorganisms
10.1038/s41396-023-01387-z · 2023 · External reference
Dynamic distribution of gut microbiota in posthatching chicks and its relationship with average daily gain
10.1016/j.psj.2023.103008 · 2023 · External reference
Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition
10.1128/aem.66.12.5488-5491.2000 · 2000 · External reference
In-feed resin acids reduce matrix metalloproteinase activity in the ileal mucosa of healthy broilers without inducing major effects on the gut microbiota
10.1186/s13567-019-0633-3 · 2019 · External reference
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
10.1093/nar/gks808 · 2013 · External reference
DADA2: High-resolution sample inference from Illumina amplicon data
10.1038/nmeth.3869 · 2016 · External reference
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
10.1093/nar/gks1219 · 2012 · External reference
Candidatus Arthromitus’ revised: segmented filamentous bacteria in arthropod guts are members of Lachnospiraceae
10.1111/j.1462-2920.2012.02731.x · 2012 · External reference
Immune-modulating gut symbionts are not Candidatus Arthromitus
10.1038/mi.2012.91 · 2013 · External reference
10.1099/ijsem.0.003685
10.1099/ijsem.0.003685 · External reference
PICRUSt2 for prediction of metagenome functions
10.1038/s41587-020-0548-6 · 2020 · External reference
KEGG: Kyoto Encyclopedia of Genes and Genomes
10.1093/nar/28.1.27 · 2000 · External reference
Towards biome-specific analysis of meta-omics data
10.1038/ismej.2015.188 · 2016 · External reference
Species–function relationships shape ecological properties of the human gut microbiome
10.1038/nmicrobiol.2016.88 · 2016 · External reference
Unresolved reference
2025 · External reference
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
10.1371/journal.pone.0061217 · 2013 · External reference
Fast Stable Restricted Maximum Likelihood and Marginal Likelihood Estimation of Semiparametric Generalized Linear Models
10.1111/j.1467-9868.2010.00749.x · 2011 · External reference
gratia: An R package for exploring generalized additive models
10.21105/joss.06962 · 2024 · External reference
10.32614/cran.package.vegan
10.32614/cran.package.vegan · 2001 · External reference
Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics
10.1371/journal.pone.0030126 · 2012 · External reference
10.18129/b9.bioc.dirichletmultinomial
10.18129/b9.bioc.dirichletmultinomial · 2017 · External reference
Associations between species and groups of sites: indices and statistical inference
10.1890/08-1823.1 · 2009 · External reference
MaAsLin 3: refining and extending generalized multivariable linear models for meta-omic association discovery
10.1038/s41592-025-02923-9 · 2026 · External reference
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
10.1186/gb-2007-8-2-r19 · 2007 · External reference
10.1186/gb-2002-3-7-research0034 · 2002 · Admitted local publication
Immune Response of Chicken Gut to Natural Colonization by Gut Microflora and to Salmonella enterica Serovar Enteritidis Infection
10.1128/iai.01375-10 · 2011 · External reference
Effects of Lactobacilli on Cytokine Expression by Chicken Spleen and Cecal Tonsil Cells
10.1128/cvi.00143-10 · 2010 · External reference
Induction of inflammatory cytokines and toll-like receptors in chickens infected with avian H9N2 influenza virus
10.1186/1297-9716-42-64 · 2011 · External reference
Analysis of Chicken TLR4, CD28, MIF, MD-2, and LITAF Genes in a Salmonella enteritidis Resource Population
10.1093/ps/83.4.544 · 2004 · External reference
Influence of the Gut Microbiota Composition on Campylobacter jejuni Colonization in Chickens
10.1128/iai.00380-17 · 2017 · External reference
Identification and validation of housekeeping genes as internal control for gene expression in an intravenous LPS inflammation model in chickens
10.1016/j.vetimm.2007.12.002 · 2008 · External reference
Supplementation of xanthophylls decreased proinflammatory and increased anti-inflammatory cytokines in hens and chicks
10.1017/s0007114512000025 · 2012 · External reference
Toxic effects of dietary exposure to T-2 toxin on intestinal and hepatic biotransformation enzymes and drug transporter systems in broiler chickens
10.1016/j.fct.2012.12.055 · 2013 · External reference
A Versatile Panel of Reference Gene Assays for the Measurement of Chicken mRNA by Quantitative PCR
10.1371/journal.pone.0160173 · 2016 · External reference
Dynamic changes in the avian gut microbiome in response to diverse lifestyles
10.1111/ibi.13388 · 2025 · External reference
Gut microbiota of endangered crested ibis: Establishment, diversity, and association with reproductive output
10.1371/journal.pone.0250075 · 2021 · External reference
Characterization and Comparison of Microbiota in the Gastrointestinal Tracts of the Goat (Capra hircus) During Preweaning Development
10.3389/fmicb.2019.02125 · 2019 · External reference
Characterizing the gut microbiome of broilers raised under conventional and no antibiotics ever practices
10.1016/j.psj.2023.102832 · 2023 · External reference
Temporal dynamics of the cecal and litter microbiome of chickens raised in two separate broiler houses
10.3389/fphys.2023.1083192 · 2023 · External reference
Microbiota of the chicken gastrointestinal tract: influence on health, productivity and disease
10.1007/s00253-014-5646-2 · 2014 · External reference
The Transgenerational Link: Breeder Gut Microbiota and Broiler Progeny Development
10.1002/mbo3.70174 · 2025 · External reference
Increased Incidence of Enterococcal Infection in Nonviable Broiler Chicken Embryos in Western Canadian Hatcheries as Detected by Matrix-Assisted Laser Desorption/Ionization-Time-of-Flight Mass Spectrometry
10.1637/11678-052317-reg.1 · 2017 · External reference
Evaluation of the impact of formaldehyde fumigation during the hatching phase on contamination in the hatch cabinet and early performance in broiler chickens
10.1016/j.psj.2023.102584 · 2023 · External reference
Microbes vs. chemistry in the origin of the anaerobic gut lumen
10.1073/pnas.1718635115 · 2018 · External reference
The Spatial and Temporal Characterization of Gut Microbiota in Broilers
10.3389/fvets.2021.712226 · 2021 · External reference
Cecal Microbiota Development and Physiological Responses of Broilers Following Early Life Microbial Inoculation Using Different Delivery Methods and Microbial Sources
10.1128/aem.00271-23 · 2023 · External reference
Trait-based community assembly and succession of the infant gut microbiome
10.1038/s41467-019-08377-w · 2019 · External reference
Intestinal mucus components and secretion mechanisms: what we do and do not know
10.1038/s12276-023-00960-y · 2023 · External reference
Mucus barrier, mucins and gut microbiota: the expected slimy partners?
10.1136/gutjnl-2020-322260 · 2020 · External reference
Mucus, commensals, and the immune system
10.1080/19490976.2022.2041342 · 2022 · External reference
Intracellular glycogen accumulation by human gut commensals as a niche adaptation trait
10.1080/19490976.2023.2235067 · 2023 · External reference
Bacterial Succession in the Broiler Gastrointestinal Tract
10.1128/aem.02549-15 · 2016 · External reference
Dynamic description of temporal changes of gut microbiota in broilers
10.1016/j.psj.2022.102037 · 2022 · External reference
Age-associated changes in the growth development of abdominal fat and their correlations with cecal gut microbiota in broiler chickens
10.1016/j.psj.2023.102900 · 2023 · External reference
Composition and Function of Chicken Gut Microbiota
10.3390/ani10010103 · 2020 · External reference
Development of the duodenal, ileal, jejunal and caecal microbiota in chickens
10.1186/s42523-019-0017-z · 2019 · External reference
Anatomy, Microbes, and Fiber: Small Versus Large Intestine
10.1093/japr/15.1.154 · 2006 · External reference
Function and nutritional roles of the avian caeca: a review
10.1017/s0043933913000287 · 2013 · External reference
Revealing the physical restrictions of caecal influx in broilers through the use of solid and soluble markers
10.1016/j.aninu.2024.12.004 · 2025 · External reference
Development of the Ileal Microbiota in Three Broiler Breeds
10.3389/fvets.2020.00017 · 2020 · External reference
Systematic profiling of the chicken gut microbiome reveals dietary supplementation with antibiotics alters expression of multiple microbial pathways with minimal impact on community structure
10.1186/s40168-022-01319-7 · 2022 · External reference
Growing, evolving and sticking in a flowing environment: understanding IgA interactions with bacteria in the gut
10.1111/imm.13156 · 2020 · External reference
License to Clump: Secretory IgA Structure–Function Relationships Across Scales
10.1146/annurev-micro-032521-041803 · 2023 · External reference
Immunoglobulin secretion influences the composition of chicken caecal microbiota
10.1038/s41598-024-76856-2 · 2024 · External reference
Layer segmented filamentous bacteria colonize and impact gut health of broiler chickens
10.1128/msphere.00492-24 · 2024 · External reference
Unresolved reference
External reference
