Research graph
References from Cis-meQTL mapping reveals genetic architecture of DNA methylation in a giga-genome species. Local targets link to admitted publications; unresolved targets remain external evidence.
Genetic strategies for improving crop yields
10.1038/s41586-019-1679-0 · 2019 · External reference
Revolutions in agriculture chart a course for targeted breeding of old and new crops
10.1126/science.aax0025 · 2019 · External reference
Evolution of crop species: genetics of domestication and diversification
10.1038/nrg3605 · 2013 · External reference
Designing future crops: genomics-assisted breeding comes of age
10.1016/j.tplants.2021.03.010 · 2021 · External reference
Reap the crop wild relatives for breeding future crops
10.1016/j.tibtech.2021.08.009 · 2022 · External reference
Embracing plant plasticity or robustness as a means of ensuring food security
10.1038/s41467-025-55872-4 · 2025 · External reference
Epigenetic regulation of adaptive responses of forest tree species to the environment
10.1002/ece3.461 · 2013 · External reference
Unresolved reference
1957 · External reference
Epigenetics in ecology and evolution: what we know and what we need to know
10.1111/mec.13617 · 2016 · External reference
Diversity and dynamics of DNA methylation: epigenomic resources and tools for crop breeding
10.1270/jsbbs.19005 · 2019 · External reference
10.1073/pnas.0908755106
10.1073/pnas.0908755106 · 2009 · External reference
Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids
10.1186/gb-2013-14-6-r57 · 2013 · External reference
Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids
10.1105/tpc.109.072041 · 2010 · External reference
DNA methylation footprints during soybean domestication and improvement
10.1186/s13059-018-1516-z · 2018 · External reference
Evolutionary and functional genomics of DNA methylation in maize domestication and improvement
10.1038/s41467-020-19333-4 · 2020 · External reference
Mapping the epigenetic basis of complex traits
10.1126/science.1248127 · 2014 · External reference
Quantitative resistance to clubroot infection mediated by transgenerational epigenetic variation in Arabidopsis
10.1111/nph.15579 · 2019 · External reference
10.1016/j.cell.2016.06.044
10.1016/j.cell.2016.06.044 · 2016 · External reference
Exploiting induced and natural epigenetic variation for crop improvement
10.1038/nrg.2017.45 · 2017 · External reference
The secret garden—epigenetic alleles underlie complex traits
10.1126/science.1251864 · 2014 · External reference
Transgenerational epigenetic inheritance during plant evolution and breeding
10.1016/j.tplants.2024.04.007 · 2024 · External reference
Transgenerational epigenetic inheritance: how important is it?
10.1038/nrg3435 · 2013 · External reference
Transgenerational epigenetic inheritance: myths and mechanisms
10.1016/j.cell.2014.02.045 · 2014 · External reference
Patterns of population epigenomic diversity
10.1038/nature11968 · 2013 · External reference
Genetic impacts on DNA methylation: research findings and future perspectives
10.1186/s13059-021-02347-6 · 2021 · External reference
Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels
10.1371/journal.pgen.1004663 · 2014 · External reference
Deep inside the epigenetic memories of stressed plants
10.1016/j.tplants.2022.09.004 · 2023 · External reference
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
10.1038/nrg2719 · 2010 · External reference
Functions of DNA methylation: islands, start sites, gene bodies and beyond
10.1038/nrg3230 · 2012 · External reference
Two-step recruitment of RNA-directed DNA methylation to tandem repeats
10.1371/journal.pbio.0040363 · 2006 · External reference
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
10.1038/nature06745 · 2008 · External reference
Covering your bases: inheritance of DNA methylation in plant genomes
10.1093/mp/sst165 · 2014 · External reference
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
10.1038/ng1929 · 2007 · External reference
Deposition of histone variant H2A.Z within gene bodies regulates responsive genes
10.1371/journal.pgen.1002988 · 2012 · External reference
Evolutionary patterns of genic DNA methylation vary across land plants
10.1038/nplants.2015.222 · 2016 · External reference
Methylome evaluation in plants
10.1186/s13059-016-1127-5 · 2018 · External reference
10.1073/pnas.1618019113
10.1073/pnas.1618019113 · 2016 · External reference
Epigenetics in forest trees: key driver to phenotypic plasticity and adaptation under stress
10.1007/s10142-025-01711-0 · 2025 · External reference
Epigenetic responses of trees to environmental stress in the context of climate change
10.1111/brv.13132 · 2024 · External reference
Evidence of climate-induced stress of Norway spruce along elevation gradient preceding the current dieback in Central Europe
10.1007/s00468-020-02022-6 · 2021 · External reference
Drought increases Norway spruce susceptibility to the Eurasian spruce bark beetle and associated fungi
10.1111/nph.19635 · 2024 · External reference
The consequence of tree pests and diseases for ecosystem services
10.1126/science.1235773 · 2013 · External reference
The Norway spruce genome sequence and conifer genome evolution
10.1038/nature12211 · 2013 · External reference
Timing of bud set in Picea abies is regulated by a memory of temperature during zygotic and somatic embryogenesis
10.1111/j.1469-8137.2007.02222.x · 2008 · External reference
MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
10.1111/j.1469-8137.2010.03341.x · 2010 · External reference
Advances and promises of epigenetics for forest trees
10.3390/f11090976 · 2020 · External reference
10.1073/pnas.1604666113
10.1073/pnas.1604666113 · 2016 · External reference
Gene body DNA methylation in plants
10.1016/j.pbi.2016.12.007 · 2017 · External reference
10.1073/pnas.1215380110
10.1073/pnas.1215380110 · 2013 · External reference
Epigenome plasticity in plants
10.1038/s41576-021-00407-y · 2022 · External reference
Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis
10.1186/s13059-021-02392-1 · 2021 · External reference
Combined analysis of nuclear and mitochondrial markers provide new insight into the genetic structure of North European Picea abies
10.1038/hdy.2009.16 · 2009 · External reference
Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce
10.1111/eva.12801 · 2019 · External reference
Changes in DNA methylation fingerprint of Quercus ilex trees in response to experimental field drought simulated by rainout shelters
10.1111/plb.12049 · 2014 · External reference
Epigenetics in forest trees: state of the art and potential implications for breeding and management in a context of climate change
10.1016/bs.abr.2018.09.003 · 2018 · External reference
Species-wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients
10.1111/mec.13563 · 2016 · External reference
Detection of somatic epigenetic variation in Norway spruce via targeted bisulfite sequencing
10.1002/ece3.4374 · 2018 · External reference
Targeted bisulfite sequencing of Scots pine adaptation-related genes
10.1016/j.plantsci.2024.112173 · 2024 · External reference
Cytokinin: from autoclaved DNA to two-component signaling
10.1093/plcell/koad327 · 2024 · External reference
Epitype-inducing temperatures drive DNA methylation changes during somatic embryogenesis in the long-lived gymnosperm Norway spruce
10.3389/fpls.2023.1196806 · 2023 · External reference
Uncovering epigenetic and transcriptional regulation of growth in Douglas-fir: identification of differential methylation regions in mega-sized introns
10.1111/pbi.14229 · 2023 · External reference
Isolation of plant DNA from fresh tissue
1990 · External reference
Design and evaluation of a large sequence-capture probe set and associated SNPs for diploid and haploid samples of Norway spruce (Picea abies)
10.1101/291716 · 2018 · External reference
Unresolved reference
2010 · External reference
MultiQC: summarize analysis results for multiple tools and samples in a single report
10.1093/bioinformatics/btw354 · 2016 · External reference
Trimmomatic: a flexible trimmer for Illumina sequence data
10.1093/bioinformatics/btu170 · 2014 · External reference
1000 conifer genomes: Genome innovation, organisation and diversity
10.21203/rs.3.rs-6502828/v1 · 2025 · External reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
10.1093/gigascience/giab008
10.1093/gigascience/giab008 · 2021 · External reference
The Sequence Alignment/Map format and SAMtools
10.1093/bioinformatics/btp352 · 2009 · External reference
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
10.1093/bioinformatics/btr167 · 2011 · External reference
The variant call format and VCFtools
10.1093/bioinformatics/btr330 · 2011 · External reference
Genotype imputation with millions of reference samples
10.1016/j.ajhg.2015.11.020 · 2016 · External reference
Second-generation PLINK: rising to the challenge of larger and richer datasets
10.1186/s13742-015-0047-8 · 2015 · External reference
PLINK: a tool set for whole-genome association and population-based linkage analyses
10.1086/519795 · 2007 · External reference
Efficient methods to compute genomic predictions
10.3168/jds.2007-0980 · 2008 · External reference
A high-performance computing toolset for relatedness and principal component analysis of SNP data
10.1093/bioinformatics/bts606 · 2012 · External reference
10.1007/978-3-319-24277-4
10.1007/978-3-319-24277-4 · 2016 · External reference
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
10.1093/bioinformatics/btw313 · 2016 · External reference
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
10.1186/gb-2012-13-10-r87 · 2012 · External reference
Controlling the false discovery rate: a practical and powerful approach to multiple testing
10.1111/j.2517-6161.1995.tb02031.x · 1995 · External reference
Unresolved reference
2019 · External reference
The detection of disease clustering and a generalized regression approach
1967 · External reference
PROTEST: a PROcrustean randomization TEST of community environment concordance
10.1080/11956860.1995.11682297 · 1995 · External reference
A unifying tool for linear multivariate statistical methods: the RV-coefficient
10.2307/2347233 · 1976 · External reference
Unresolved reference
2022 · External reference
The ade4 package: implementing the duality diagram for ecologists
10.18637/jss.v022.i04 · 2007 · External reference
Matrix eQTL: ultra fast eQTL analysis via large matrix operations
10.1093/bioinformatics/bts163 · 2012 · External reference
Genetic association testing using the GENESIS R/Bioconductor package
10.1093/bioinformatics/btz567 · 2019 · External reference
BEDTools: a flexible suite of utilities for comparing genomic features
10.1093/bioinformatics/btq033 · 2010 · External reference
eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale
10.1093/molbev/msab293 · 2021 · External reference
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