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References from Structural variation turnovers and defective genomes: key drivers for the in vitro evolution of the large double-stranded DNA koi herpesvirus (KHV). Local targets link to admitted publications; unresolved targets remain external evidence.
Genotypic and Phenotypic Diversity of Herpes Simplex Virus 2 within the Infected Neonatal Population
10.1128/msphere.00590-18 · 2019 · External reference
Genome Sequences of Three Koi Herpesvirus Isolates Representing the Expanding Distribution of an Emerging Disease Threatening Koi and Common Carp Worldwide
10.1128/jvi.00146-07 · 2007 · External reference
Cyprinid Herpesvirus 3
10.1016/bs.aivir.2015.03.001 · 2015 · External reference
Identification of an essential virulence gene of cyprinid herpesvirus 3
10.1016/j.antiviral.2017.07.002 · 2017 · External reference
A Few-Polyhedra Mutant and Wild-Type Nucleopolyhedrovirus Remain as a Stable Polymorphism during Serial Coinfection in Trichoplusia ni
10.1128/aem.69.4.2052-2057.2003 · 2003 · External reference
Transmissible Viral Vaccines
10.1016/j.tim.2017.09.007 · 2018 · External reference
Functional Characterisation of the Genomic and Antigenomic Promoters of Sendai Virus
10.1006/viro.1995.1464 · 1995 · External reference
Reversion to neurovirulence of the live-attenuated Sabin type 3 oral pollovirus vaccine
10.1093/nar/12.20.7787 · 1984 · External reference
Ultra Deep Sequencing of a Baculovirus Population Reveals Widespread Genomic Variations
10.3390/v7072788 · 2015 · External reference
Unresolved reference
External reference
Genomic sequences of a low passage herpes simplex virus 2 clinical isolate and its plaque-purified derivative strain
10.1016/j.virol.2013.12.014 · 2014 · External reference
Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination
10.1073/pnas.1818130116 · 2019 · External reference
The DNA Damage Response Induced by Infection with Human Cytomegalovirus and Other Viruses
10.3390/v6052155 · 2014 · External reference
Identification of structural proteins of koi herpesvirus
10.1007/s00705-014-2190-4 · 2014 · External reference
Genomic and biologic comparisons of cyprinid herpesvirus 3 strains
10.1186/s13567-018-0532-z · 2018 · External reference
CyHV-3: the third cyprinid herpesvirus
10.3354/dao02614 · 2013 · External reference
The emergence of koi herpesvirus and its significance to European aquaculture
2004 · External reference
Targeted genomic enrichment and sequencing of CyHV-3 from carp tissues confirms low nucleotide diversity and mixed genotype infections
10.7717/peerj.2516 · 2016 · External reference
The Double-Edged Sword: How Evolution Can Make or Break a Live-Attenuated Virus Vaccine
10.1007/s12052-011-0365-y · 2011 · External reference
Identification and characterization of a new E3 ubiquitin ligase in white spot syndrome virus involved in virus latency
10.1186/1743-422x-5-151 · 2008 · External reference
The Double-Edged Sword: How Evolution Can Make or Break a Live-Attenuated Virus Vaccine
10.1007/s12052-011-0365-y · 2011 · External reference
Identification and characterization of a new E3 ubiquitin ligase in white spot syndrome virus involved in virus latency
10.1186/1743-422x-5-151 · 2008 · External reference
A Herpesvirus Associated with Mass Mortality of Juvenile and Adult Koi, a Strain of Common Carp
10.1577/1548-8667(2000)0120044:ahawmm2.0.co;2 · 2000 · External reference
Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast
10.1038/ncomms14061 · 2017 · External reference
Vaccine-derived polioviruses and the endgame strategy for global polio eradication
10.1146/annurev.micro.58.030603.123625 · 2005 · External reference
Cyprinid herpesvirus 3 Evolves In Vitro through an Assemblage of Haplotypes that Alternatively Become Dominant or Under-Represented
10.3390/v11080754 · 2019 · External reference
Genetic Variability of Koi Herpesvirus In vitro—A Natural Event?
10.3389/fmicb.2017.00982 · 2017 · External reference
Phylogenetic and recombination analysis of the herpesvirus genus varicellovirus
10.1186/s12864-017-4283-4 · 2017 · External reference
Stimulation of Homology-Directed Repair at I-SceI-Induced DNA Breaks during the Permissive Life Cycle of Human Cytomegalovirus
10.1128/jvi.02514-10 · 2011 · External reference
Quasispecies Theory and the Behavior of RNA Viruses
10.1371/journal.ppat.1001005 · 2010 · External reference
Rationalizing the development of live attenuated virus vaccines
10.1038/nbt.1635 · 2010 · External reference
SVJedi: genotyping structural variations with long reads
10.1093/bioinformatics/btaa527 · 2020 · External reference
Defective Interfering Viral Particles in Acute Dengue Infections
10.1371/journal.pone.0019447 · 2011 · External reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
The Sequence Alignment/Map format and SAMtools
10.1093/bioinformatics/btp352 · 2009 · External reference
Whole-genome sequence of a novel Chinese cyprinid herpesvirus 3 isolate reveals the existence of a distinct European genotype in East Asia
10.1016/j.vetmic.2014.11.022 · 2015 · External reference
Wide spectrum and high frequency of genomic structural variation, including transposable elements, in large double-stranded DNA viruses
10.1093/ve/vez060 · 2020 · External reference
Herpes simplex virus 2 (HSV-2) evolves faster in cell culture than HSV-1 by generating greater genetic diversity
10.1371/journal.ppat.1009541 · 2021 · External reference
Defective interfering viruses and their potential as antiviral agents
10.1002/rmv.641 · 2010 · External reference
Alvis: a tool for contig and read ALignment VISualisation and chimera detection
10.1186/s12859-021-04056-0 · 2021 · External reference
Live attenuated vaccines: Historical successes and current challenges
10.1016/j.virol.2015.03.032 · 2015 · External reference
Isolation and Characterization of an Arterivirus Defective Interfering RNA Genome
10.1128/jvi.74.7.3156-3165.2000 · 2000 · External reference
Recombination in Enteroviruses, a Multi-Step Modular Evolutionary Process
10.3390/v11090859 · 2019 · External reference
Vesicular stomatitis virus defective interfering particles can contain extensive genomic sequence rearrangements and base substitutions
10.1016/0092-8674(84)90041-2 · 1984 · External reference
Altering Compositional Properties of Viral Genomes to Design Live-Attenuated Vaccines
10.3389/fmicb.2021.676582 · 2021 · External reference
Recombination in viruses: Mechanisms, methods of study, and evolutionary consequences
10.1016/j.meegid.2014.12.022 · 2015 · External reference
Homologous Interference by Incomplete Sendai Virus Particles: Changes in Virus-Specific Ribonucleic Acid Synthesis
10.1128/jvi.8.4.388-394.1971 · 1971 · External reference
Cyprinid herpesvirus 3: an interesting virus for applied and fundamental research
10.1186/1297-9716-44-85 · 2013 · External reference
deepTools2: a next generation web server for deep-sequencing data analysis
10.1093/nar/gkw257 · 2016 · External reference
Impacts of Genome-Wide Analyses on Our Understanding of Human Herpesvirus Diversity and Evolution
10.1128/jvi.00908-17 · 2018 · External reference
Limits and patterns of cytomegalovirus genomic diversity in humans
10.1073/pnas.1501880112 · 2015 · External reference
Mechanisms of viral mutation
10.1007/s00018-016-2299-6 · 2016 · External reference
Accurate detection of complex structural variations using single-molecule sequencing
10.1038/s41592-018-0001-7 · 2018 · External reference
Identification and characterization of novel double zinc fingers encoded by putative proteins in genome of white spot syndrome virus
10.1007/s00705-019-04150-y · 2019 · External reference
Accumulation of attenuating mutations in varying proportions within a high passage very virulent plus strain of Gallid herpesvirus type 2
10.1016/j.virusres.2010.01.007 · 2010 · External reference
Isolation and characterization of koi herpesvirus (KHV) from Indonesia: identification of a new genetic lineage
10.1111/j.1365-2761.2010.01216.x · 2010 · External reference
Mechanisms of DNA Virus Evolution
10.1016/b978-0-12-809633-8.20993-x · 2021 · External reference
Coalescing replication compartments provide the opportunity for recombination between coinfecting herpesviruses
10.1096/fj.201900032r · 2019 · External reference
Proteomic and Functional Analyses of the Virion Transmembrane Proteome of Cyprinid Herpesvirus 3
10.1128/jvi.01209-17 · 2017 · External reference
Defective viral genomes are key drivers of the virus–host interaction
10.1038/s41564-019-0465-y · 2019 · External reference
Structural and Functional Diversity among Five RING Finger Proteins from Carassius Auratus Herpesvirus (CaHV)
10.3390/v13020254 · 2021 · External reference
Investigation of chimeric reads using the MinION
10.12688/f1000research.11547.2 · 2017 · External reference
The Role of DNA Recombination in Herpes Simplex Virus DNA Replication
10.1080/15216540310001612237 · 2003 · External reference
A defective viral genome strategy elicits broad protective immunity against respiratory viruses
10.1016/j.cell.2021.11.023 · 2021 · External reference
Engineering the Live-Attenuated Polio Vaccine to Prevent Reversion to Virulence
10.1016/j.chom.2020.04.003 · 2020 · External reference
RING-Domain E3 Ligase-Mediated Host–Virus Interactions: Orchestrating Immune Responses by the Host and Antagonizing Immune Defense by Viruses
10.3389/fimmu.2018.01083 · 2018 · External reference
