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References from Towards an improved understanding of molecular evolution: the relative roles of selection, drift, and everything in between. Local targets link to admitted publications; unresolved targets remain external evidence.
Genomic Data Reveal a Complex Making of Humans
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Using human demographic history to infer natural selection reveals contrasting patterns on different families of immune genes
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On the Abundance and Distribution of Transposable Elements in the Genome of Drosophila melanogaster
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Alu repeats and human genomic diversity
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Evaluating loci for use in the genetic analysis of population structure
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Patterns of genetic variability in genomic regions with low rates of recombinationPatterns of genetic variability in genomic regions with low rates of recombination
10.1101/739888 · 2020 · External reference
Reduced signal for polygenic adaptation of height in UK Biobank
10.7554/elife.39725 · 2019 · External reference
Biased Inference of Selection Due to GC-Biased Gene Conversion and the Rate of Protein Evolution in Flycatchers When Accounting for It
10.1093/molbev/msy149 · 2018 · External reference
On the Population Dynamics of Junk: A Review on the Population Genomics of Transposable Elements
10.3390/genes10060419 · 2019 · External reference
The global impact ofWolbachiaon mitochondrial diversity and evolution
10.1111/jeb.13186 · 2017 · External reference
LFMM 2: Fast and Accurate Inference of Gene-Environment Associations in Genome-Wide Studies
10.1093/molbev/msz008 · 2019 · External reference
The effect of deleterious mutations on neutral molecular variation.
10.1093/genetics/134.4.1289 · 1993 · External reference
Meta-analysis of gross insertions causing human genetic disease: Novel mutational mechanisms and the role of replication slippage
10.1002/humu.20150 · 2005 · External reference
Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans
10.1093/hmg/11.20.2463 · 2002 · External reference
Comment on "Ongoing Adaptive Evolution of ASPM , a Brain Size Determinant in Homo sapiens " and " Microcephalin , a Gene Regulating Brain Size, Continues to Evolve Adaptively in Humans"
10.1126/science.1122712 · 2006 · External reference
Range Shifts and Adaptive Responses to Quaternary Climate Change
10.1126/science.292.5517.673 · 2001 · External reference
A new FST‐based method to uncover local adaptation using environmental variables
10.1111/2041-210x.12418 · 2015 · External reference
Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes
10.1146/annurev-genom-082908-150001 · 2009 · External reference
Mutations arising in the wave front of an expanding population
10.1073/pnas.0308064100 · 2004 · External reference
Mutation rate variation in the mammalian genome
10.1016/j.gde.2003.10.008 · 2003 · External reference
Introgression of Crop Alleles into Wild or Weedy Populations
10.1146/annurev-ecolsys-110512-135840 · External reference
Unresolved reference
1977 · External reference
Microcephalin , a Gene Regulating Brain Size, Continues to Evolve Adaptively in Humans
10.1126/science.1113722 · 2005 · External reference
Robust Demographic Inference from Genomic and SNP Data
10.1371/journal.pgen.1003905 · 2013 · External reference
The evolutionary advantage of recombination
10.1093/genetics/78.2.737 · 1974 · External reference
The Correlation between Relatives on the Supposition of Mendelian Inheritance.
10.1017/s0080456800012163 · 1918 · External reference
Unresolved reference
1930 · External reference
An Approximate Bayesian Computation Approach to Overcome Biases That Arise When Using Amplified Fragment Length Polymorphism Markers to Study Population Structure
10.1534/genetics.107.084541 · 2008 · External reference
The Genetic Consequences of Spatially Varying Selection in the Panmictic American Eel (Anguilla rostrata)
10.1534/genetics.111.134825 · 2012 · External reference
Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution
10.1016/j.tig.2007.03.011 · 2007 · External reference
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates
10.1016/j.tig.2008.10.011 · 2009 · External reference
Recent Selective Sweeps in North American Drosophila melanogaster Show Signatures of Soft Sweeps
10.1371/journal.pgen.1005004 · 2015 · External reference
Inferring population size changes with sequence and SNP data: lessons from human bottlenecks
10.1038/hdy.2012.120 · 2013 · External reference
Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates
10.1534/genetics.115.181453 · 2015 · External reference
Transition from Background Selection to Associative Overdominance Promotes Diversity in Regions of Low Recombination
10.1016/j.cub.2019.11.063 · 2020 · External reference
On Ohta's hypothesis: Most amino acid substitutions are deleterious
10.1007/bf00166596 · 1995 · External reference
A Dual Program for Translation Regulation in Cellular Proliferation and Differentiation
10.1016/j.cell.2014.08.011 · 2014 · External reference
Quantification of GC-biased gene conversion in the human genome
10.1101/gr.185488.114 · 2015 · External reference
GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis
10.1016/j.tig.2014.05.002 · 2014 · External reference
Genetic linkage and molecular evolution
10.1016/s0960-9822(01)00408-0 · 2001 · External reference
Local Fitness Landscapes Predict Yeast Evolutionary Dynamics in Directionally Changing Environments
10.1534/genetics.117.300519 · 2018 · External reference
Robust Identification of Local Adaptation from Allele Frequencies
10.1534/genetics.113.152462 · 2013 · External reference
Unresolved reference
2018 · External reference
Mutation Rate Variation is a Primary Determinant of the Distribution of Allele Frequencies in Humans
10.1371/journal.pgen.1006489 · 2016 · External reference
Bayesian inference of population size history from multiple loci
10.1186/1471-2148-8-289 · 2008 · External reference
The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History
10.1371/journal.pone.0062992 · 2013 · External reference
The Centromere Paradox: Stable Inheritance with Rapidly Evolving DNA
10.1126/science.1062939 · 2001 · External reference
Soft Sweeps
10.1534/genetics.104.036947 · 2005 · External reference
Isolation with Migration Models for More Than Two Populations
10.1093/molbev/msp296 · 2010 · External reference
Variation in the mutation rate across mammalian genomes
10.1038/nrg3098 · 2011 · External reference
Frequency-Dependent Natural Selection in the Handedness of Scale-Eating Cichlid Fish
10.1126/science.260.5105.216 · 1993 · External reference
Deleterious background selection with recombination.
10.1093/genetics/141.4.1605 · 1995 · External reference
Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts
10.1098/rspb.2005.3056 · 2005 · External reference
A century of bias in genetics and evolution
10.1038/s41437-019-0194-2 · 2019 · External reference
The importance of the Neutral Theory in 1968 and 50 years on: A response to Kern and Hahn 2018
10.1111/evo.13650 · 2018 · External reference
Joint Inference of the Distribution of Fitness Effects of Deleterious Mutations and Population Demography Based on Nucleotide Polymorphism Frequencies
10.1534/genetics.107.080663 · 2007 · External reference
The Neutral Theory in Light of Natural Selection
10.1093/molbev/msy092 · 2018 · External reference
Evolutionary Rate at the Molecular Level
10.1038/217624a0 · 1968 · External reference
The Fate of Mutations Surfing on the Wave of a Range Expansion
10.1093/molbev/msj057 · 2005 · External reference
Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
10.1371/journal.pgen.1002384 · 2011 · External reference
The neutral theory is dead. Long live the neutral theory
10.1002/bies.950180812 · 1996 · External reference
Biased Gene Conversion Skews Allele Frequencies in Human Populations, Increasing the Disease Burden of Recessive Alleles
10.1016/j.ajhg.2014.09.008 · 2014 · External reference
The Selfish Segregation Distorter Gene Complex of Drosophila melanogaster
10.1534/genetics.112.141390 · 2012 · External reference
GC-Content Evolution in Bacterial Genomes: The Biased Gene Conversion Hypothesis Expands
10.1371/journal.pgen.1004941 · 2015 · External reference
Multiple Factors Confounding Phylogenetic Detection of Selection on Codon Usage
10.1093/molbev/msy047 · 2018 · External reference
GC-Biased Gene Conversion in Yeast Is Specifically Associated with Crossovers: Molecular Mechanisms and Evolutionary Significance
10.1093/molbev/mst056 · 2013 · External reference
Inference of human population history from individual whole-genome sequences
10.1038/nature10231 · 2011 · External reference
The Ecology and Evolutionary Dynamics of Meiotic Drive
10.1016/j.tree.2016.02.001 · 2016 · External reference
Exploring population size changes using SNP frequency spectra
10.1038/ng.3254 · 2015 · External reference
pcadapt: anRpackage to perform genome scans for selection based on principal component analysis
10.1111/1755-0998.12592 · 2016 · External reference
Comparative population genomics of latitudinal variation in Drosophila simulans and Drosophila melanogaster
10.1111/mec.13446 · 2016 · External reference
Human Demographic History Impacts Genetic Risk Prediction across Diverse Populations
10.1016/j.ajhg.2017.03.004 · 2017 · External reference
Distributions of epistasis in microbes fit predictions from a fitness landscape model
10.1038/ng1998 · 2007 · External reference
The origin and behavior of mutable loci in maize
10.1073/pnas.36.6.344 · 1950 · External reference
Ongoing Adaptive Evolution of ASPM , a Brain Size Determinant in Homo sapiens
10.1126/science.1116815 · 2005 · External reference
Estimating the Strength of Selective Sweeps from Deep Population Diversity Data
10.1534/genetics.112.138461 · 2012 · External reference
Some Genetic Aspects of Sex
10.1086/280418 · 1932 · External reference
Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination
10.1126/science.1182363 · 2010 · External reference
Genetic Villains: Killer Meiotic Drivers
10.1016/j.tig.2018.02.003 · 2018 · External reference
Development of associative overdominance through linkage disequilibrium in finite populations
10.1017/s0016672300002391 · 1970 · External reference
On the constancy of the evolutionary rate of cistrons
10.1007/bf01659391 · 1971 · External reference
PRDM9 and Its Role in Genetic Recombination
10.1016/j.tig.2017.12.017 · 2018 · External reference
Reliability of genetic bottleneck tests for detecting recent population declines
10.1111/j.1365-294x.2012.05635.x · 2012 · External reference
On the accumulation of deleterious mutations during range expansions
10.1111/mec.12524 · 2013 · External reference
Soft Sweeps III: The Signature of Positive Selection from Recurrent Mutation
10.1371/journal.pgen.0020186 · 2006 · External reference
Soft Sweeps II—Molecular Population Genetics of Adaptation from Recurrent Mutation or Migration
10.1093/molbev/msj117 · 2006 · External reference
An RNA gene expressed during cortical development evolved rapidly in humans
10.1038/nature05113 · 2006 · External reference
Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences
10.7554/elife.36317 · 2018 · External reference
Recombination, meiotic expression and human codon usage
10.7554/elife.27344 · 2017 · External reference
Large-Scale Selective Sweep among Segregation Distorter Chromosomes in African Populations of Drosophila melanogaster
10.1371/journal.pgen.1000463 · 2009 · External reference
Detecting positive selection within genomes: the problem of biased gene conversion
10.1098/rstb.2010.0007 · 2010 · External reference
Effects of Interference Between Selected Loci on the Mutation Load, Inbreeding Depression, and Heterosis
10.1534/genetics.115.178533 · 2015 · External reference
Detecting recent positive selection in the human genome from haplotype structure
10.1038/nature01140 · 2002 · External reference
Genome-wide detection and characterization of positive selection in human populations
10.1038/nature06250 · 2007 · External reference
S/HIC: Robust Identification of Soft and Hard Sweeps Using Machine Learning
10.1371/journal.pgen.1005928 · 2016 · External reference
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
10.1093/genetics/123.3.585 · 1989 · External reference
Three wise centromere functions: see no error, hear no break, speak no delay
10.1038/embor.2013.181 · 2013 · External reference
polyDFEv2.0: testing for invariance of the distribution of fitness effects within and across species
10.1093/bioinformatics/bty1060 · 2019 · External reference
Haemoglobinopathies and the clinical epidemiology of malaria: a systematic review and meta-analysis
10.1016/s1473-3099(12)70055-5 · 2012 · External reference
Robust and scalable inference of population history from hundreds of unphased whole genomes
10.1038/ng.3748 · 2017 · External reference
Climate, climate change and range boundaries
10.1111/j.1472-4642.2010.00642.x · 2010 · External reference
Accounting for ancestry: population substructure and genome-wide association studies
10.1093/hmg/ddn268 · 2008 · External reference
Rapid spread of an inherited incompatibility factor in California Drosophila
10.1038/353440a0 · 1991 · External reference
Beyond SNPs: how to detect selection on transposable element insertions
10.1111/2041-210x.12781 · 2017 · External reference
Correction: A Map of Recent Positive Selection in the Human Genome
10.1371/journal.pbio.0040154 · 2006 · External reference
Strong Regional Biases in Nucleotide Substitution in the Chicken Genome
10.1093/molbev/msk008 · 2006 · External reference
Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST
10.1086/682949 · 2015 · External reference
A unified classification system for eukaryotic transposable elements
10.1038/nrg2165 · 2007 · External reference
EVOLUTION IN MENDELIAN POPULATIONS
10.1093/genetics/16.2.97 · 1931 · External reference
HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes
10.1073/pnas.1410068111 · 2014 · External reference
Resolving the Conflict Between Associative Overdominance and Background Selection
10.1534/genetics.116.188912 · 2016 · External reference
Precise estimates of mutation rate and spectrum in yeast
10.1073/pnas.1323011111 · 2014 · External reference
