Research graph
References from Joint inference of adaptive and demographic history from temporal population genomic data. Local targets link to admitted publications; unresolved targets remain external evidence.
Thinking too positive? Revisiting current methods of population genetic selection inference
10.1016/j.tig.2014.09.010 · 2014 · External reference
Likelihood-Free Inference of Population Structure and Local Adaptation in a Bayesian Hierarchical Model
10.1534/genetics.109.112391 · 2010 · External reference
Using Genomic Data to Infer Historic Population Dynamics of Nonmodel Organisms
10.1146/annurev-ecolsys-110617-062431 · 2018 · External reference
Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome
10.1371/journal.pgen.1000083 · 2008 · External reference
Random Forests
10.1023/a:1010933404324 · 2001 · External reference
The Linked Selection Signature of Rapid Adaptation in Temporal Genomic Data
10.1534/genetics.119.302581 · 2019 · External reference
Estimating the genome-wide contribution of selection to temporal allele frequency change
10.1073/pnas.1919039117 · 2020 · External reference
Molecular Population Genetics
10.1534/genetics.116.196493 · 2017 · External reference
Genome Sequencing of Museum Specimens Reveals Rapid Changes in the Genetic Composition of Honey Bees in California
10.1093/gbe/evy007 · 2018 · External reference
Approximate Bayesian Computation (ABC) in practice
10.1016/j.tree.2010.04.001 · 2010 · External reference
The Effect of Strong Purifying Selection on Genetic Diversity
10.1534/genetics.118.301058 · 2018 · External reference
Inference of natural selection from ancient DNA
10.1002/evl3.165 · 2020 · External reference
Finding the missing honey bee genes: lessons learned from a genome upgrade
10.1186/1471-2164-15-86 · 2014 · External reference
Precise assessment of the number of patrilines and of genetic relatedness in honeybee colonies
10.1098/rspb.1994.0133 · 1994 · External reference
Hitchhiking Under Positive Darwinian Selection
10.1093/genetics/155.3.1405 · 2000 · External reference
Identifying Signatures of Selection in Genetic Time Series
10.1534/genetics.113.158220 · 2014 · External reference
The clarifying role of time series data in the population genetics of HIV
10.1371/journal.pgen.1009050 · 2021 · External reference
Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time
10.1038/s41559-017-0297-1 · 2017 · External reference
DILS: Demographic inferences with linked selection by using ABC
10.1111/1755-0998.13323 · 2021 · External reference
Asymptotic properties of approximate Bayesian computation
10.1093/biomet/asy027 · 2018 · External reference
Tree‐sequence recording in SLiM opens new horizons for forward‐time simulation of whole genomes
10.1111/1755-0998.12968 · 2019 · External reference
SLiM 2: Flexible, Interactive Forward Genetic Simulations
10.1093/molbev/msw211 · 2017 · External reference
Estimating the mutation load in human genomes
10.1038/nrg3931 · 2015 · External reference
Soft sweeps and beyond: understanding the patterns and probabilities of selection footprints under rapid adaptation
10.1111/2041-210x.12808 · 2017 · External reference
Distinguishing Between Selective Sweeps and Demography Using DNA Polymorphism Data
10.1534/genetics.104.038224 · 2005 · External reference
On the Utility of Linkage Disequilibrium as a Statistic for Identifying Targets of Positive Selection in Nonequilibrium Populations
10.1534/genetics.106.069450 · 2007 · External reference
Toward an Evolutionarily Appropriate Null Model: Jointly Inferring Demography and Purifying Selection
10.1534/genetics.119.303002 · 2020 · External reference
Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites
10.1371/journal.pgen.1000924 · 2010 · External reference
Linkage Disequilibrium as a Signature of Selective Sweeps
10.1534/genetics.103.025387 · 2004 · External reference
Impacts of Recurrent Hitchhiking on Divergence and Demographic Inference in Drosophila
10.1093/gbe/evy142 · 2018 · External reference
A genome-wide Approximate Bayesian Computation approach suggests only limited numbers of soft sweeps in humans over the last 100,000 years
10.1101/2019.12.22.886234 · External reference
Improving SNP discovery by base alignment quality
10.1093/bioinformatics/btr076 · 2011 · External reference
Joint analysis of demography and selection in population genetics: where do we stand and where could we go?
10.1111/j.1365-294x.2011.05308.x · 2012 · External reference
Distinguishing Positive Selection From Neutral Evolution: Boosting the Performance of Summary Statistics
10.1534/genetics.110.122614 · 2011 · External reference
Direct Determination of the Mutation Rate in the Bumblebee Reveals Evidence for Weak Recombination-Associated Mutation and an Approximate Rate Constancy in Insects
10.1093/molbev/msw226 · 2017 · External reference
Adaptive protein evolution at the Adh locus in Drosophila
10.1038/351652a0 · 1991 · External reference
Frequent adaptation and the McDonald–Kreitman test
10.1073/pnas.1220835110 · 2013 · External reference
Genetic Draft, Selective Interference, and Population Genetics of Rapid Adaptation
10.1146/annurev-ecolsys-110512-135920 · 2013 · External reference
Genetic drift and estimation of effective population size
10.1093/genetics/98.3.625 · 1981 · External reference
Molecular Signatures of Natural Selection
10.1146/annurev.genet.39.073003.112420 · 2005 · External reference
Effective population size in eusocial Hymenoptera with worker-produced males
10.1038/hdy.2012.11 · 2012 · External reference
Ohio Supercomputer Center
1987 · External reference
Tracking-selection. Version v1.0.1
10.5281/zenodo.4599735 · 2022 · External reference
Genetic load in marine animals: a review
10.1093/cz/zow096 · 2016 · External reference
Population genetic inference from genomic sequence variation
10.1101/gr.079509.108 · 2010 · External reference
Reliable ABC model choice via random forests
10.1093/bioinformatics/btv684 · 2016 · External reference
R: A Language and Environment for Statistical Computing
2020 · External reference
ABC random forests for Bayesian parameter inference
10.1093/bioinformatics/bty867 · 2019 · External reference
Population genomics of eusocial insects: the costs of a vertebrate-like effective population size
10.1111/jeb.12331 · 2014 · External reference
Is adaptation limited by mutation? A timescale-dependent effect of genetic diversity on the adaptive substitution rate in animals
10.1371/journal.pgen.1008668 · 2020 · External reference
Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence
10.1371/journal.pbio.2000234 · 2016 · External reference
Effective size of populations under selection
10.1093/genetics/139.2.1013 · 1995 · External reference
Population genetics of polymorphism and divergence
10.1093/genetics/132.4.1161 · 1992 · External reference
Background Selection Does Not Mimic the Patterns of Genetic Diversity Produced by Selective Sweeps
10.1534/genetics.120.303469 · 2020 · External reference
Supervised Machine Learning for Population Genetics: A New Paradigm
10.1016/j.tig.2017.12.005 · 2018 · External reference
Effects of Linked Selective Sweeps on Demographic Inference and Model Selection
10.1534/genetics.116.190223 · 2016 · External reference
Pervasive Natural Selection in the Drosophila Genome?
10.1371/journal.pgen.1000495 · 2009 · External reference
Deep Learning for Population Genetic Inference
10.1371/journal.pcbi.1004845 · 2016 · External reference
EggLib3: A python package for population genetics and genomics
10.1111/1755-0998.13672 · 2022 · External reference
Genetic hitchhiking versus background selection: the controversy and its implications
10.1098/rstb.2009.0278 · 2010 · External reference
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
10.1093/genetics/123.3.585 · 1989 · External reference
Detecting and Measuring Selection from Gene Frequency Data
10.1534/genetics.113.152991 · 2014 · External reference
10.1093/oso/9780198830870.001.0001
10.1093/oso/9780198830870.001.0001 · 2018 · External reference
Estimating F-Statistics for the Analysis of Population Structure
10.2307/2408641 · 1984 · External reference
Drug Resistance Evolution in HIV in the Late 1990s: Hard Sweeps, Soft Sweeps, Clonal Interference and the Accumulation of Drug Resistance Mutations
10.1534/g3.119.400772 · 2020 · External reference
Effective population size in Hymenoptera with complementary sex determination
10.1038/sj.hdy.6800588 · 2004 · External reference
