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References from Evolutionary analysis of candidate non-coding elements regulating neurodevelopmental genes in vertebrates. Local targets link to admitted publications; unresolved targets remain external evidence.
Basic local alignment search tool
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A comprehensive transcriptional map of primate brain development
10.1038/nature18637 · 2016 · External reference
Ultraconserved Elements in the Human Genome
10.1126/science.1098119 · 2004 · External reference
An integrated encyclopedia of DNA elements in the human genome
10.1038/nature11247 · 2012 · External reference
Human-Chimpanzee Differences in a FZD8 Enhancer Alter Cell-Cycle Dynamics in the Developing Neocortex
10.1016/j.cub.2015.01.041 · 2015 · External reference
Glocal alignment: finding rearrangements during alignment
10.1093/bioinformatics/btg1005 · 2003 · External reference
Dynamic spatiotemporal expression of LIM genes and cofactors in the embryonic and postnatal cerebral cortex
10.1002/dvdy.10235 · 2003 · External reference
Evolution at Two Levels: On Genes and Form
10.1371/journal.pbio.0030245 · 2005 · External reference
Otx and Emx homeobox genes in brain development
10.1387/ijdb.11061430 · 2000 · External reference
The 3D Genome as Moderator of Chromosomal Communication
10.1016/j.cell.2016.02.007 · 2016 · External reference
Chromatin Domains: The Unit of Chromosome Organization
10.1016/j.molcel.2016.05.018 · 2016 · External reference
ChromHMM: automating chromatin-state discovery and characterization
10.1038/nmeth.1906 · 2012 · External reference
The evolution of hierarchical gene regulatory networks
10.1038/nrg2499 · 2009 · External reference
Systematic mapping of functional enhancer–promoter connections with CRISPR interference
10.1126/science.aag2445 · 2016 · External reference
Architecture of the human regulatory network derived from ENCODE data
10.1038/nature11245 · 2012 · External reference
Comprehensive transcriptome analysis of neocortical layers in humans, chimpanzees and macaques
10.1038/nn.4548 · 2017 · External reference
Expression of LMO-4 in the central nervous system of the embryonic and adult mouse
1999 · External reference
Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling
10.1073/pnas.1507669112 · 2015 · External reference
Integrative analysis of 111 reference human epigenomes
10.1038/nature14248 · 2015 · External reference
RETRACTED: Dynamic expression and regulation by Fgf8 and Pou2 of the zebrafish LIM-only gene, lmo4
10.1016/s1567-133x(02)00061-3 · 2002 · External reference
Three Periods of Regulatory Innovation During Vertebrate Evolution
10.1126/science.1202702 · 2011 · External reference
How to usefully compare homologous plant genes and chromosomes as DNA sequences
10.1111/j.1365-313x.2007.03326.x · 2008 · External reference
Emx2 is a dose-dependent negative regulator of Sox2 telencephalic enhancers
10.1093/nar/gks295 · 2012 · External reference
A zebrafish LMO4 ortholog limits the size of the forebrain and eyes through negative regulation of six3b and rx3
10.1016/j.ydbio.2007.07.004 · 2007 · External reference
Early Evolution of Conserved Regulatory Sequences Associated with Development in Vertebrates
10.1371/journal.pgen.1000762 · 2009 · External reference
GREAT improves functional interpretation of cis-regulatory regions
10.1038/nbt.1630 · 2010 · External reference
The human transcriptome across tissues and individuals
10.1126/science.aaa0355 · 2015 · External reference
Transcriptional landscape of the prenatal human brain
10.1038/nature13185 · 2014 · External reference
A family of transposable elements co-opted into developmental enhancers in the mouse neocortex
10.1038/ncomms7644 · 2015 · External reference
The Lamprey Pallium Provides a Blueprint of the Mammalian Motor Projections from Cortex
10.1016/j.cub.2014.12.013 · 2015 · External reference
Genome-wide association study identifies 74 loci associated with educational attainment
10.1038/nature17671 · 2016 · External reference
Evolution of lineage-specific functions in ancient cis -regulatory modules
10.1098/rsob.150079 · 2015 · External reference
In vivo enhancer analysis of human conserved non-coding sequences
10.1038/nature05295 · 2006 · External reference
Evolution of the neocortex: a perspective from developmental biology
10.1038/nrn2719 · 2009 · External reference
Evolutionary changes in promoter and enhancer activity during human corticogenesis
10.1126/science.1260943 · 2015 · External reference
Transcriptional enhancers: from properties to genome-wide predictions
10.1038/nrg3682 · 2014 · External reference
Obesity-associated variants within FTO form long-range functional connections with IRX3
10.1038/nature13138 · 2014 · External reference
Conserved noncoding elements and the evolution of animal body plans
10.1002/bies.200900014 · 2009 · External reference
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
10.1101/gr.139105.112 · 2012 · External reference
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
10.1186/s13059-018-1519-9 · 2018 · External reference
The Enhancer Landscape during Early Neocortical Development Reveals Patterns of Dense Regulation and Co-option
10.1371/journal.pgen.1003728 · 2013 · External reference
Chromosome conformation elucidates regulatory relationships in developing human brain
10.1038/nature19847 · 2016 · External reference
