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References from Botrytis cinerea strains infecting grapevine and tomato display contrasted repertoires of accessory chromosomes, transposons and small RNAs. Local targets link to admitted publications; unresolved targets remain external evidence.
Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea
10.1371/journal.pgen.1002230 · 2011 · External reference
Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes
10.1186/s12864-015-1347-1 · 2015 · External reference
Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity
10.3389/fmicb.2015.00996 · 2015 · External reference
Accessories Make the Outfit: Accessory Chromosomes and Other Dispensable DNA Regions in Plant-Pathogenic Fungi
10.1094/mpmi-06-17-0135-fi · 2018 · External reference
Draft Genome Sequence of Botrytis cinerea BcDW1, Inoculum for Noble Rot of Grape Berries
10.1128/genomea.00252-13 · 2013 · External reference
Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi
10.1186/1471-2164-15-1071 · 2014 · External reference
Non-canonical Helitrons in Fusarium oxysporum
10.1186/s13100-016-0083-7 · 2016 · External reference
Botrytis cinerea virulence factors: new insights into a necrotrophic and polyphageous pathogen
10.1111/j.1574-6968.2007.00930.x · 2007 · External reference
The Complete Genome Sequence of the Phytopathogenic Fungus Sclerotinia sclerotiorum Reveals Insights into the Genome Architecture of Broad Host Range Pathogens
10.1093/gbe/evx030 · 2017 · External reference
Boty, a long-terminal-repeat retroelement in the phytopathogenic fungus Botrytis cinerea
10.1128/aem.61.1.103-108.1995 · 1995 · External reference
SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic Chromosomes
10.1371/journal.pone.0092621 · 2014 · External reference
Botrytis, the Good, the Bad and the Ugly
10.1007/978-3-319-23371-0_1 · 2015 · External reference
Considering Transposable Element Diversification in De Novo Annotation Approaches
10.1371/journal.pone.0016526 · 2011 · External reference
A devil's bargain with transposable elements in plant pathogens
10.1016/j.tig.2021.08.005 · 2021 · External reference
Evolution and Organization of a Highly Dynamic, Subtelomeric Helicase Gene Family in the Rice Blast Fungus Magnaporthe grisea
10.1093/genetics/162.1.103 · 2002 · External reference
A Non-canonical Melanin Biosynthesis Pathway Protects Aspergillus terreus Conidia from Environmental Stress
10.1016/j.chembiol.2016.03.014 · 2016 · External reference
clinker & clustermap.js: automatic generation of gene cluster comparison figures
10.1093/bioinformatics/btab007 · 2021 · External reference
Gene Flow between Divergent Cereal- and Grass-Specific Lineages of the Rice Blast Fungus Magnaporthe oryzae
10.1128/mbio.01219-17 · 2018 · External reference
QUAST: quality assessment tool for genome assemblies
10.1093/bioinformatics/btt086 · 2013 · External reference
PASTEC: An Automatic Transposable Element Classification Tool
10.1371/journal.pone.0091929 · 2014 · External reference
A comparative genomics study of 23 Aspergillus species from section Flavi
10.1038/s41467-019-14051-y · 2020 · External reference
Structural and sequence diversity of eukaryotic transposable elements
10.1266/ggs.18-00024 · 2019 · External reference
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
10.1101/gr.215087.116 · 2017 · External reference
Telomeric DNA of Botrytis cinerea: a useful tool for strain identification
10.1111/j.1574-6968.1997.tb12783.x · 1997 · External reference
Flipper, a mobile Fot1-like transposable element in Botrytis cinerea
10.1007/s004380050465 · 1997 · External reference
Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species
10.1371/journal.pbio.2003583 · 2017 · External reference
The carbohydrate-active enzymes database (CAZy) in 2013
10.1093/nar/gkt1178 · 2014 · External reference
Cutadapt removes adapter sequences from high-throughput sequencing reads
10.14806/ej.17.1.200 · 2011 · External reference
Emerging Trends in Molecular Interactions between Plants and the Broad Host Range Fungal Pathogens Botrytis cinerea and Sclerotinia sclerotiorum
10.3389/fpls.2016.00422 · 2016 · External reference
Alternaria Toxins: Potential Virulence Factors and Genes Related to Pathogenesis
10.3389/fmicb.2017.01451 · 2017 · External reference
The polyphagous plant pathogenic fungus Botrytis cinerea encompasses host‐specialized and generalist populations
10.1111/1462-2920.14829 · 2019 · External reference
Population Genomics Reveals Molecular Determinants of Specialization to Tomato in the Polyphagous Fungal Pathogen Botrytis cinerea in France
10.1094/phyto-07-20-0302-fi · 2021 · External reference
Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum
10.1186/s12864-018-5399-x · 2019 · External reference
Genetic Diversity of Botrytis cinerea Revealed by Multilocus Sequencing, and Identification of B. cinerea Populations Showing Genetic Isolation and Distinct Host Adaptation
10.3389/fpls.2021.663027 · 2021 · External reference
Botcinic acid biosynthesis in Botrytis cinerea relies on a subtelomeric gene cluster surrounded by relics of transposons and is regulated by the Zn2Cys6 transcription factor BcBoa13
10.1007/s00294-019-00952-4 · 2019 · External reference
The botrydial biosynthetic gene cluster of Botrytis cinerea displays a bipartite genomic structure and is positively regulated by the putative Zn(II)2Cys6 transcription factor BcBot6
10.1016/j.fgb.2016.10.003 · 2016 · External reference
Retrotransposons as pathogenicity factors of the plant pathogenic fungus Botrytis cinerea
10.1186/s13059-021-02446-4 · 2021 · External reference
Combined Evidence Annotation of Transposable Elements in Genome Sequences
10.1371/journal.pcbi.0010022 · 2005 · External reference
The telomere-linked helicase (TLH) gene family in Magnaporthe oryzae: revised gene structure reveals a novel TLH-specific protein motif
10.1007/s00294-009-0240-3 · 2009 · External reference
Organization of Chromosome Ends in Ustilago maydis. RecQ-like Helicase Motifs at Telomeric Regions
10.1093/genetics/148.3.1043 · 1998 · External reference
Liftoff: accurate mapping of gene annotations
10.1093/bioinformatics/btaa1016 · 2021 · External reference
Screening of a Botrytis cinerea one-hybrid library reveals a Cys2His2 transcription factor involved in the regulation of secondary metabolism gene clusters
10.1016/j.fgb.2013.01.006 · 2013 · External reference
Automatic annotation of eukaryotic genes, pseudogenes and promoters
10.1186/gb-2006-7-s1-s10 · 2006 · External reference
The Origins of Plant Pathogens in Agro-Ecosystems
10.1146/annurev.phyto.010708.154114 · 2008 · External reference
Preanalytical Conditions and DNA Isolation Methods Affect Telomere Length Quantification in Whole Blood
10.1371/journal.pone.0143889 · 2015 · External reference
Dynamics in Secondary Metabolite Gene Clusters in Otherwise Highly Syntenic and Stable Genomes in the Fungal Genus Botrytis
10.1093/gbe/evaa218 · 2020 · External reference
Electrophoretic karyotype analysis of Botrytis cinerea
10.1007/bf03041402 · 1993 · External reference
A gapless genome sequence of the fungus Botrytis cinerea
10.1111/mpp.12384 · 2017 · External reference
Many Shades of Grey in Botrytis–Host Plant Interactions
10.1016/j.tplants.2018.03.016 · 2018 · External reference
High-Throughput Multiplex Sequencing of miRNA
10.1002/0471142905.hg1112s73 · 2012 · External reference
Diversity Within and Between Species of Botrytis
10.1007/978-3-319-23371-0_6 · 2015 · External reference
Population structure and temporal maintenance of the multihost fungal pathogen Botrytis cinerea: causes and implications for disease management
10.1111/1462-2920.12563 · 2015 · External reference
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
10.1371/journal.pone.0112963 · 2014 · External reference
Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways
10.1126/science.1239705 · 2013 · External reference
A unified classification system for eukaryotic transposable elements
10.1038/nrg2165 · 2007 · External reference
Accessory Chromosomes in Fusarium oxysporum
10.1094/phyto-03-20-0069-ia · 2020 · External reference
