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References from Evidence for shared ancestry between Actinobacteria and Firmicutes bacteriophages. Local targets link to admitted publications; unresolved targets remain external evidence.
Genomics of Three New Bacteriophages Useful in the Biocontrol of Salmonella
10.3389/fmicb.2016.00545 · 2016 · External reference
GenBank
10.1093/nar/gkw1070 · 2016 · External reference
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
10.1038/s41587-019-0100-8 · 2019 · External reference
Complete Genome Sequences of Six BI Cluster Streptomyces Bacteriophages, HotFries, Moozy, Rainydai, RavenPuff, Scap1, and SenditCS
10.1128/mra.00993-18 · 2017 · External reference
Measurement of bacterial replication rates in microbial communities
10.1038/nbt.3704 · 2016 · External reference
A Novel Genus of Actinobacterial Tectiviridae
10.3390/v11121134 · 2019 · External reference
Comparative genomics and evolution of the tailed-bacteriophages
10.1016/j.mib.2005.06.014 · 2005 · External reference
The Generalized Transducing Salmonella Bacteriophage ES18: Complete Genome Sequence and DNA Packaging Strategy
10.1128/jb.187.3.1091-1104.2005 · 2005 · External reference
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
10.1093/oxfordjournals.molbev.a026334 · 2000 · External reference
Generalized gene transfer by virus-like particles from marine bacteria
10.3354/ame013075 · 1997 · External reference
Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes
10.1186/s40168-018-0452-1 · 2018 · External reference
Phamerator: a bioinformatic tool for comparative bacteriophage genomics
10.1186/1471-2105-12-395 · 2011 · External reference
Improved detection of helix-turn-helix DNA-binding motifs in protein sequences
10.1093/nar/18.17.5019 · 1990 · External reference
Accelerated Profile HMM Searches
10.1371/journal.pcbi.1002195 · 2011 · External reference
Genome Sequence of Bacillus cereus Group Phage SalinJah
10.1128/genomea.00953-16 · 2016 · External reference
Statistical structure of host-phage interactions
10.1073/pnas.1101595108 · 2011 · External reference
Molecular architecture of tailed double-stranded DNA phages
10.4161/bact.28281 · 2014 · External reference
Characterization of 1706, a virulent phage from Lactococcus lactis with similarities to prophages from other Firmicutes
10.1016/j.virol.2007.12.002 · 2008 · External reference
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
10.1093/oxfordjournals.molbev.a025808 · 1997 · External reference
The distribution of bacterial doubling times in the wild
10.1098/rspb.2018.0789 · 2018 · External reference
Evolutionary connection between the catalytic subunits of DNA- dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases
10.1186/1472-6807-3-1 · 2003 · External reference
Drawing explicit phylogenetic networks and their integration into SplitsTree
10.1186/1471-2148-8-22 · 2008 · External reference
Complete Genome Sequences of Four Novel Lactococcus lactis Phages Distantly Related to the Rare 1706 Phage Species
10.1128/genomea.00265-14 · 2014 · External reference
PhamDB: a web-based application for building Phamerator databases
10.1093/bioinformatics/btw106 · 2016 · External reference
Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates
10.1093/molbev/mss112 · 2012 · External reference
FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.
10.1093/molbev/msv150 · 2015 · External reference
Automated classification of tailed bacteriophages according to their neck organization
10.1186/1471-2164-15-1027 · 2014 · External reference
Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales
10.1038/s41564-019-0448-z · 2019 · External reference
Genome sequence-based species delimitation with confidence intervals and improved distance functions
10.1186/1471-2105-14-60 · 2013 · External reference
VICTOR: genome-based phylogeny and classification of prokaryotic viruses
10.1093/bioinformatics/btx440 · 2017 · External reference
Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies
10.1186/s12864-016-3018-2 · 2016 · External reference
Ultrafast Approximation for Phylogenetic Bootstrap
10.1093/molbev/mst024 · 2013 · External reference
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
10.1093/molbev/msaa015 · 2020 · External reference
Modeling Amino Acid Replacement
10.1089/10665270050514918 · 2000 · External reference
Introduction of bacteriophage Mu into bacteria of various genera and intergeneric gene transfer by RP4::Mu.
10.1128/jb.145.1.358-368.1981 · 1981 · External reference
Mining Protein Sequences for Motifs
10.1089/106652702761034145 · 2002 · External reference
ViPTree: the viral proteomic tree server
10.1093/bioinformatics/btx157 · 2017 · External reference
scnRCA: A Novel Method to Detect Consistent Patterns of Translational Selection in Mutationally-Biased Genomes
10.1371/journal.pone.0076177 · 2013 · External reference
Origins of Highly Mosaic Mycobacteriophage Genomes
10.1016/s0092-8674(03)00233-2 · 2003 · External reference
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
10.7554/elife.06416 · 2015 · External reference
Annotation of Bacteriophage Genome Sequences Using DNA Master: An Overview
10.1007/978-1-4939-7343-9_16 · 2017 · External reference
Cluster J Mycobacteriophages: Intron Splicing in Capsid and Tail Genes
10.1371/journal.pone.0069273 · 2013 · External reference
Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships
10.1128/mbio.01069-17 · 2017 · External reference
More Is Better: Selecting for Broad Host Range Bacteriophages
10.3389/fmicb.2016.01352 · 2016 · External reference
PhagesDB: the actinobacteriophage database
10.1093/bioinformatics/btw711 · 2017 · External reference
Characterization and comparative genomic analysis of virulent and temperateBacillus megateriumbacteriophages
10.7717/peerj.5687 · 2018 · External reference
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
10.1038/msb.2011.75 · 2011 · External reference
Genome phylogeny based on gene content
10.1038/5052 · 1999 · External reference
The HHpred interactive server for protein homology detection and structure prediction
10.1093/nar/gki408 · 2005 · External reference
The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics
10.1371/journal.pgen.1000808 · 2010 · External reference
Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut
10.1038/s41564-017-0053-y · 2018 · External reference