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References from Marker and source-marker reprogramming of Most Permissive Boolean networks and ensembles with BoNesis. Local targets link to admitted publications; unresolved targets remain external evidence.
Aeon 2021: Bifurcation Decision Trees in Boolean Networks
10.1007/978-3-030-85633-5_14 · 2021 · External reference
Causal Reasoning on Boolean Control Networks Based on Abduction: Theory and Application to Cancer Drug Discovery
10.1109/tcbb.2018.2889102 · 2019 · External reference
Synthesis of Boolean Networks from Biological Dynamical Constraints using Answer-Set Programming
10.1109/ictai.2019.00014 · 2019 · External reference
Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration
10.1371/journal.pcbi.1004571 · 2015 · External reference
Control Strategy Identification via Trap Spaces in Boolean Networks
10.1007/978-3-030-60327-4_9 · 2020 · External reference
Temporal Reprogramming of Boolean Networks
10.1007/978-3-319-67471-1_11 · 2017 · External reference
Sequential Reprogramming of Boolean Networks Made Practical
10.1007/978-3-030-31304-3_1 · 2019 · External reference
Patient-specific Boolean models of signalling networks guide personalised treatments
10.7554/elife.72626 · 2022 · External reference
Bilevel integer programming on a Boolean network for discovering critical genetic alterations in cancer development and therapy
10.1016/j.ejor.2021.10.019 · 2022 · External reference
Computational Complexity of Minimal Trap Spaces in Boolean Networks
10.48550/arxiv.2212.12756 · 2022 · External reference
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
10.3389/fphys.2018.00680 · 2018 · External reference
Unresolved reference
1995 · External reference
Sequential reprogramming of biological network fate
10.1016/j.tcs.2021.03.013 · 2021 · External reference
Reconciling qualitative, abstract, and scalable modeling of biological networks
10.1038/s41467-020-18112-5 · 2020 · External reference
Non-deterministic updates of Boolean networks and their dynamics: the impact of updates
10.1002/9781119716600.ch6 · 2022 · External reference
Boolean networks and their dynamics: the impact of updates
10.1002/9781119716600.ch6 · 2022 · External reference
pystablemotifs: Python library for attractor identification and control in Boolean networks
10.1093/bioinformatics/btab825 · 2021 · External reference
Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction
10.1038/msb.2009.87 · 2009 · External reference
Reconstructing Boolean network ensembles from single-cell data for unraveling dynamics in the aging of human hematopoietic stem cells
10.1016/j.csbj.2021.09.012 · 2021 · External reference
CABEAN: a software for the control of asynchronous Boolean networks
10.1093/bioinformatics/btaa752 · 2020 · External reference
Target Control in Logical Models Using the Domain of Influence of Nodes
10.3389/fphys.2018.00454 · 2018 · External reference
Cell Fate Reprogramming by Control of Intracellular Network Dynamics
10.1371/journal.pcbi.1004193 · 2015 · External reference
Cell Line–Specific Network Models of ER+ Breast Cancer Identify Potential PI3Kα Inhibitor Resistance Mechanisms and Drug Combinations
10.1158/0008-5472.can-21-1208 · 2021 · External reference
