Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Research graph
References from Genomic changes during the evolution of the Coxiella genus along the parasitism-mutualism continuum. Local targets link to admitted publications; unresolved targets remain external evidence.
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
10.1038/ncomms13219 · 2016 · External reference
Life in acid: pH homeostasis in acidophiles
10.1016/j.tim.2007.02.005 · 2007 · External reference
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
10.1089/cmb.2012.0021 · 2012 · External reference
Coxiella-Like Endosymbiont of Rhipicephalus sanguineus Is Required for Physiological Processes During Ontogeny
10.3389/fmicb.2020.00493 · 2020 · External reference
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
10.1093/nar/gkx343 · 2017 · External reference
Coxiella burnetii and Related Tick Endosymbionts Evolved from Pathogenic Ancestors
10.1093/gbe/evab108 · 2021 · External reference
Vector competence of the African argasid tick Ornithodoros moubata for the Q fever agent Coxiella burnetii
10.1371/journal.pntd.0009008 · 2021 · External reference
Evidence that microbes identified as tick-borne pathogens are nutritional endosymbionts
10.1016/j.cell.2021.03.053 · 2021 · External reference
Tissue localization of Coxiella-like endosymbionts in three European tick species through fluorescence in situ hybridization
10.1016/j.ttbdis.2019.03.014 · 2019 · External reference
BLAST+: architecture and applications
10.1186/1471-2105-10-421 · 2009 · External reference
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
10.1093/oxfordjournals.molbev.a026334 · 2000 · External reference
Inhibitory Effects of Linear Lipopeptides From a Marine Bacillus subtilis on the Wheat Blast Fungus Magnaporthe oryzae Triticum
10.3389/fmicb.2020.00665 · 2020 · External reference
Proteome and Antigen Profiling of <span class="italique">Coxiella burnetii</span> Developmental Forms
10.1128/iai.00883-06 · 2007 · External reference
Temporal Analysis of <span class="italique">Coxiella burnetii</span> Morphological Differentiation
10.1128/jb.186.21.7344-7352.2004 · 2004 · External reference
UpSetR: an R package for the visualization of intersecting sets and their properties
10.1093/bioinformatics/btx364 · 2017 · External reference
Evolutionary changes in symbiont community structure in ticks
10.1111/mec.14094 · 2017 · External reference
The Importance of Revisiting Legionellales Diversity
10.1016/j.pt.2018.09.008 · 2018 · External reference
Convergence of Nutritional Symbioses in Obligate Blood Feeders
10.1016/j.pt.2020.07.007 · 2020 · External reference
Tick-Bacteria Mutualism Depends on B Vitamin Synthesis Pathways
10.1016/j.cub.2018.04.038 · 2018 · External reference
The Recent Evolution of a Maternally-Inherited Endosymbiont of Ticks Led to the Emergence of the Q Fever Pathogen, Coxiella burnetii
10.1371/journal.ppat.1004892 · 2015 · External reference
The Importance of Ticks in Q Fever Transmission: What Has (and Has Not) Been Demonstrated?
10.1016/j.pt.2015.06.014 · 2015 · External reference
Comparative Genomics of Wolbachia and the Bacterial Species Concept
10.1371/journal.pgen.1003381 · 2013 · External reference
OrthoFinder: phylogenetic orthology inference for comparative genomics
10.1186/s13059-019-1832-y · 2019 · External reference
A<span class="italique">Francisella</span>virulence factor catalyses an essential reaction of biotin synthesis
10.1111/mmi.12460 · 2014 · External reference
Escherichia coli acid resistance: tales of an amateur acidophile
10.1038/nrmicro1021 · 2004 · External reference
Evolutionary Dissection of the Dot/Icm System Based on Comparative Genomics of 58 Legionella Species
10.1093/gbe/evz186 · 2019 · External reference
More than 18,000 effectors in the <span class="italique">Legionella</span> genus genome provide multiple, independent combinations for replication in human cells
10.1073/pnas.1808016116 · 2019 · External reference
Distinctive Genome Reduction Rates Revealed by Genomic Analyses of Two Coxiella-Like Endosymbionts in Ticks
10.1093/gbe/evv108 · 2015 · External reference
A Coxiella mutualist symbiont is essential to the development of Rhipicephalus microplus
10.1038/s41598-017-17309-x · 2017 · External reference
genoPlotR: comparative gene and genome visualization in R
10.1093/bioinformatics/btq413 · 2010 · External reference
Pathogenicity Islands and the Evolution of Microbes
10.1146/annurev.micro.54.1.641 · 2000 · External reference
Estimation of the cytoplasmic pH of Coxiella burnetii and effect of substrate oxidation on proton motive force
10.1128/jb.154.2.591-597.1983 · 1983 · External reference
Biochemical stratagem for obligate parasitism of eukaryotic cells by Coxiella burnetii.
10.1073/pnas.78.5.3240 · 1981 · External reference
pH dependence of the Coxiella burnetii glutamate transport system
10.1128/jb.154.2.598-603.1983 · 1983 · External reference
Prodigal: prokaryotic gene recognition and translation initiation site identification
10.1186/1471-2105-11-119 · 2010 · External reference
Mrp Antiporters Have Important Roles in Diverse Bacteria and Archaea
10.3389/fmicb.2017.02325 · 2017 · External reference
ModelFinder: fast model selection for accurate phylogenetic estimates
10.1038/nmeth.4285 · 2017 · External reference
Chronic Q Fever in the Netherlands 5 Years after the Start of the Q Fever Epidemic: Results from the Dutch Chronic Q Fever Database
10.1128/jcm.03221-13 · 2014 · External reference
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
10.1093/nar/gkf436 · 2002 · External reference
Genome Reduction Promotes Increase in Protein Functional Complexity in Bacteria
10.1534/genetics.112.145656 · 2013 · External reference
Localization and Visualization of a <span class="italique">Coxiella</span> -Type Symbiont within the Lone Star Tick, <span class="italique">Amblyomma americanum</span>
10.1128/aem.00537-07 · 2007 · External reference
Characterization of a Multigene-Encoded Sodium/Hydrogen Antiporter (Sha) from <span class="italique">Pseudomonas aeruginosa</span> : Its Involvement in Pathogenesis
10.1128/jb.187.15.5242-5248.2005 · 2005 · External reference
Function of a Principal Na+/H+ Antiporter, ShaA, Is Required for Initiation of Sporulation in Bacillus subtilis
10.1128/jb.182.4.898-904.2000 · 2000 · External reference
IPC – Isoelectric Point Calculator
10.1186/s13062-016-0159-9 · 2016 · External reference
IPC 2.0: prediction of isoelectric point and p<span class="italique">K</span>a dissociation constants
10.1093/nar/gkab295 · 2021 · External reference
Molecular aspects of bacterial pH sensing and homeostasis
10.1038/nrmicro2549 · 2011 · External reference
Survival of Coxiella burnetii within free-living amoeba Acanthamoeba castellanii
10.1046/j.1469-0691.2001.00193.x · 2001 · External reference
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
10.1093/nar/gkm160 · 2007 · External reference
Tissue tropism and vertical transmission of<span class="italique">C</span><span class="italique">oxiella</span>in<span class="italique">R</span><span class="italique">hipicephalus sanguineus</span>and<span class="italique">R</span><span class="italique">hipicephalus turanicus</span>ticks
10.1111/1462-2920.12455 · 2014 · External reference
Composition and Seasonal Variation of Rhipicephalus turanicus and Rhipicephalus sanguineus Bacterial Communities
10.1128/aem.00323-12 · 2012 · External reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
Dissecting genome reduction and trait loss in insect endosymbionts
10.1111/nyas.13222 · 2017 · External reference
Effects of antibiotic treatment on the fecundity of Rhipicephalus haemaphysaloides ticks
10.1186/s13071-018-2807-7 · 2018 · External reference
Coinfection of Dermacentor silvarum Olenev (Acari: Ixodidae) by Coxiella-Like, Arsenophonus-Like, and Rickettsia-Like Symbionts
10.1128/aem.03575-12 · 2013 · External reference
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
10.1093/nar/25.5.955 · 1997 · External reference
Unrelated facultative endosymbionts protect aphids against a fungal pathogen
10.1111/ele.12031 · 2012 · External reference
Coping with low pH: molecular strategies in neutralophilic bacteria
10.1111/1574-6976.12076 · 2014 · External reference
Q fever: a biological weapon in your backyard
10.1016/s1473-3099(03)00804-1 · 2003 · External reference
Comparative Genomics of Serratia spp.: Two Paths towards Endosymbiotic Life
10.1371/journal.pone.0047274 · 2012 · External reference
Solving a Bloody Mess: B-Vitamin Independent Metabolic Convergence among Gammaproteobacterial Obligate Endosymbionts from Blood-Feeding Arthropods and the Leech<span class="italique">Haementeria officinalis</span>
10.1093/gbe/evv188 · 2015 · External reference
Reinventing the Wheel and Making It Round Again: Evolutionary Convergence in<span class="italique">Buchnera</span>–<span class="italique">Serratia</span>Symbiotic Consortia between the Distantly Related Lachninae Aphids<span class="italique">Tuberolachnus salignus</span>and<span class="italique">Cinara cedri</span>
10.1093/gbe/evw085 · 2016 · External reference
Molecular Evidence of<span class="italique">Coxiella</span>-like Microorganism Harbored by<span class="italique">Haemaphysalis concinnae</span>Ticks in the Russian Far East
10.1111/j.1749-6632.2003.tb07367.x · 2003 · External reference
Description of ‘Candidatus Berkiella aquae’ and ‘Candidatus Berkiella cookevillensis’, two intranuclear bacteria of freshwater amoebae
10.1099/ijsem.0.000750 · 2016 · External reference
Ultra-fast sequence clustering from similarity networks with SiLiX
10.1186/1471-2105-12-116 · 2011 · External reference
Developmental Biology of Coxiella burnetii
10.1007/978-94-007-4315-1_12 · 2012 · External reference
UrQt: an efficient software for the Unsupervised Quality trimming of NGS data
10.1186/s12859-015-0546-8 · 2015 · External reference
The Tiniest Tiny Genomes
10.1146/annurev-micro-091213-112901 · 2014 · External reference
KAAS: an automatic genome annotation and pathway reconstruction server
10.1093/nar/gkm321 · 2007 · External reference
Horizontally Acquired Biosynthesis Genes Boost Coxiella burnetii's Physiology
10.3389/fcimb.2017.00174 · 2017 · External reference
Genome reduction is associated with bacterial pathogenicity across different scales of temporal and ecological divergence
10.1101/2020.07.03.186684 · External reference
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
10.1093/molbev/msu300 · 2014 · External reference
Genome Degeneration and Adaptation in a Nascent Stage of Symbiosis
10.1093/gbe/evt210 · 2014 · External reference
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data
10.1093/bioinformatics/btv566 · 2015 · External reference
Sustained Axenic Metabolic Activity by the Obligate Intracellular Bacterium Coxiella burnetii
10.1128/jb.01911-07 · 2008 · External reference
Evaluating the Sensitivity of Mycobacterium tuberculosis to Biotin Deprivation Using Regulated Gene Expression
10.1371/journal.ppat.1002264 · 2011 · External reference
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
10.1038/nmeth.1457 · 2010 · External reference
The Pfam protein families database
10.1093/nar/gkr1065 · 2011 · External reference
The pha gene cluster of Rhizobium meliloti involved in pH adaptation and symbiosis encodes a novel type of K+ efflux system
10.1046/j.1365-2958.1998.00868.x · 1998 · External reference
R: A Language and Environment for Statistical Computing
2020 · External reference
Artemis: sequence visualization and annotation
10.1093/bioinformatics/16.10.944 · 2000 · External reference
Transcriptional Profiling of Coxiella burnetii Reveals Extensive Cell Wall Remodeling in the Small Cell Variant Developmental Form
10.1371/journal.pone.0149957 · 2016 · External reference
Gamma-Proteobacteria Aquicella lusitana gen. nov., sp. nov., and Aquicella siphonis sp. nov. Infect Protozoa and Require Activated Charcoal for Growth in Laboratory Media
10.1128/aem.69.11.6533-6540.2003 · 2003 · External reference
Molecular pathogenesis of the obligate intracellular bacterium Coxiella burnetii
10.1038/nrmicro3049 · 2013 · External reference
Prokka: rapid prokaryotic genome annotation
10.1093/bioinformatics/btu153 · 2014 · External reference
BUSCO: Assessing Genome Assembly and Annotation Completeness
10.1007/978-1-4939-9173-0_14 · 2019 · External reference
A Coxiella-Like Endosymbiont Is a Potential Vitamin Source for the Lone Star Tick
10.1093/gbe/evv016 · 2015 · External reference
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
10.1038/nbt.3988 · 2017 · External reference
DIYA: a bacterial annotation pipeline for any genomics lab
10.1093/bioinformatics/btp097 · 2009 · External reference
The COG Database: a Tool for Genome-Scale Analysis of Protein Functions and Evolution
10.1186/1471-2105-4-41 · 2003 · External reference
Reorganizing the protein space at the Universal Protein Resource (UniProt)
10.1093/nar/gkr981 · 2012 · External reference
Symbiotic Bacterium Modifies Aphid Body Color
10.1126/science.1195463 · 2010 · External reference
ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes
10.1186/gb-2011-12-3-r30 · 2011 · External reference
Lounging in a lysosome: the intracellular lifestyle of Coxiella burnetii
10.1111/j.1462-5822.2007.00901.x · 2007 · External reference
Bandage: interactive visualization of <span class="italique">de novo</span> genome assemblies
10.1093/bioinformatics/btv383 · 2015 · External reference
Purification and properties of L-Aspartate-alpha-decarboxylase, an enzyme that catalyzes the formation of beta-alanine in Escherichia coli.
10.1016/s0021-9258(18)36052-6 · 1979 · External reference
Vertical Transmission and Evolution of Mutualism from Parasitism
10.1006/tpbi.1993.1020 · 1993 · External reference
Antibiotic Treatment of the Tick Vector Amblyomma americanum Reduced Reproductive Fitness
10.1371/journal.pone.0000405 · 2007 · External reference
HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers
10.1186/1471-2164-15-717 · 2014 · External reference