Research graph
References from Near-chromosome level genome assembly of devil firefish, Pterois miles. Local targets link to admitted publications; unresolved targets remain external evidence.
First record of lionfish (Scorpaenidae: Pterois) from Libyan waters
2019 · External reference
Invasive Indo-Pacific lionfish Pterois volitans reduce recruitment of Atlantic coral-reef fishes
10.3354/meps07620 · 2008 · External reference
Basic local alignment search tool
10.1016/s0022-2836(05)80360-2 · 1990 · External reference
FASTQC. A quality control tool for high throughput sequence data
2010 · External reference
SnakeCube: containerized and automated pipeline for de novo genome assembly in HPC environments
10.1186/s13104-022-05978-5 · 2022 · External reference
Genome Sequencing of the Perciform Fish Larimichthys crocea Provides Insights into Molecular and Genetic Mechanisms of Stress Adaptation
10.1371/journal.pgen.1005118 · 2015 · External reference
Whole-Genome Shotgun Assembly and Analysis of the Genome of<span class="italique">Fugu rubripes</span>
10.1126/science.1072104 · 2002 · External reference
Whole Genome Sequencing of Greater Amberjack (<span class="italique">Seriola dumerili</span>) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing
10.1155/2018/7984292 · 2018 · External reference
Spread dynamics of invasive species
10.1073/pnas.0504272102 · 2005 · External reference
Range expansion of the common lionfish Pterois miles (Bennett, 1828) in the Mediterranean Sea: an unwanted new guest for Italian waters
10.3391/bir.2017.6.2.01 · 2017 · External reference
The Presence of the invasive Lionfish Pterois miles in the Mediterranean Sea
10.12681/mms.428 · 2013 · External reference
Genetics reveal the identity and origin of the lionfish invasion in the Mediterranean Sea
10.1038/s41598-017-07326-1 · 2017 · External reference
Foundations of invasion genetics: the Baker and Stebbins legacy
10.1111/mec.13014 · 2015 · External reference
Marine invasive alien species: a threat to global biodiversity
10.1016/s0308-597x(03)00041-1 · 2003 · External reference
Whole Genome Sequencing of the Blue Tilapia (Oreochromis aureus) Provides a Valuable Genetic Resource for Biomedical Research on Tilapias
10.3390/md17070386 · 2019 · External reference
Genomics of cold adaptations in the Antarctic notothenioid fish radiation
10.1101/2022.06.08.494096 · External reference
An evolutionary perspective on marine invasions
10.1111/eva.12906 · 2020 · External reference
Trimmomatic: a flexible trimmer for Illumina sequence data
10.1093/bioinformatics/btu170 · 2014 · External reference
Ten things you should know about transposable elements
10.1186/s13059-018-1577-z · 2018 · External reference
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
10.1038/ng.3526 · 2016 · External reference
The genomic substrate for adaptive radiation in African cichlid fish
10.1038/nature13726 · 2014 · External reference
Fast and sensitive protein alignment using DIAMOND
10.1038/nmeth.3176 · 2014 · External reference
Chromosome assembly of Collichthys lucidus, a fish of Sciaenidae with a multiple sex chromosome system
10.1038/s41597-019-0139-x · 2019 · External reference
Fish Cytolysins in All Their Complexity
10.3390/toxins13120877 · 2021 · External reference
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale
10.1093/molbev/msab293 · 2021 · External reference
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
10.1093/bioinformatics/btp348 · 2009 · External reference
De novo assembly of the goldfish ( <span class="italique">Carassius auratus</span> ) genome and the evolution of genes after whole-genome duplication
10.1126/sciadv.aav0547 · 2019 · External reference
The American Paddlefish Genome Provides Novel Insights into Chromosomal Evolution and Bone Mineralization in Early Vertebrates
10.1093/molbev/msaa326 · 2020 · External reference
The genetics and genomics of marine fish invasions: a global review
10.1007/s11160-019-09586-8 · 2019 · External reference
Toxin gene determination and evolution in scorpaenoid fish
10.1016/j.toxicon.2014.06.013 · 2014 · External reference
A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions
10.1186/s12864-017-3723-5 · 2017 · External reference
An improved genome reference for the African cichlid, Metriaclima zebra
10.1186/s12864-015-1930-5 · 2015 · External reference
New Mediterranean Biodiversity Records (October 2015)
10.12681/mms.1477 · 2015 · External reference
The lionfish Pterois sp. invasion: Has the worst-case scenario come to pass?
10.1111/jfb.13544 · 2018 · External reference
New Mediterranean Biodiversity Records (July 2016)
10.12681/mms.1734 · 2016 · External reference
Twelve years of SAMtools and BCFtools
10.1093/gigascience/giab008 · 2021 · External reference
Genome Analysis of Lagocephalus sceleratus: Unraveling the Genomic Landscape of a Successful Invader
10.3389/fgene.2021.790850 · 2021 · External reference
ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
10.1093/molbev/msz189 · 2019 · External reference
NanoPack: visualizing and processing long-read sequencing data
10.1093/bioinformatics/bty149 · 2018 · External reference
Beyond the 3 Rs to a More Comprehensive Framework of Principles for Animal Research Ethics
10.1093/ilar/ilz011 · 2019 · External reference
Marine Scorpaenidae Envenomation in Travelers: Epidemiology, Management, and Prevention
10.1111/jtm.12206 · 2015 · External reference
Genetic Data Suggest Multiple Introductions of the Lionfish (Pterois miles) into the Mediterranean Sea
10.3390/d11090149 · 2019 · External reference
A Chromosome-Level Genome Assembly of the Mandarin Fish (Siniperca chuatsi)
10.3389/fgene.2021.671650 · 2021 · External reference
The complete mitochondrial genome of the devil firefish Pterois miles (Bennett, 1828) (Scorpaenidae)
10.3109/19401736.2014.945565 · 2014 · External reference
Roles of Transposable Elements in the Different Layers of Gene Expression Regulation
10.3390/ijms20225755 · 2019 · External reference
OrthoFinder: phylogenetic orthology inference for comparative genomics
10.1186/s13059-019-1832-y · 2019 · External reference
Chromosome-level reference genome of the Siamese fighting fish Betta splendens, a model species for the study of aggression
10.1093/gigascience/giy087 · 2018 · External reference
Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, <span class="italique">Perca flavescens</span>
10.1111/1755-0998.13133 · 2020 · External reference
RepeatModeler2 for automated genomic discovery of transposable element families
10.1073/pnas.1921046117 · 2020 · External reference
Roles of transposable elements in the regulation of mammalian transcription
10.1038/s41580-022-00457-y · 2022 · External reference
A chromosome-level genome assembly of the striped catfish (Pangasianodon hypophthalmus)
10.1016/j.ygeno.2021.07.026 · 2021 · External reference
ExPASy: the proteomics server for in-depth protein knowledge and analysis
10.1093/nar/gkg563 · 2003 · External reference
Stonustoxin Is a Novel Lethal Factor from Stonefish (Synanceja horrida) Venom
10.1074/jbc.271.41.25575 · 1996 · External reference
New records of the Red Sea fishes,Pterois miles (Scorpaenidae) andPteragogus pelycus (Labridae) from the eastern Mediterranean Sea
10.1007/bf02906001 · 1992 · External reference
Chromosome anchoring in Senegalese sole (Solea senegalensis) reveals sex-associated markers and genome rearrangements in flatfish
10.1038/s41598-021-92601-5 · 2021 · External reference
QUAST: quality assessment tool for genome assemblies
10.1093/bioinformatics/btt086 · 2013 · External reference
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
10.1093/nar/gkg770 · 2003 · External reference
Erratum: Corrigendum: The zebrafish reference genome sequence and its relationship to the human genome
10.1038/nature12813 · 2013 · External reference
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
10.1093/nar/gky1085 · 2018 · External reference
The genome of a dangerous invader (fish) beauty
10.24072/pci.genomics.100241 · 2023 · External reference
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
10.1038/nature03025 · 2004 · External reference
Generation of a chromosome‐level genome assembly for Pacific halibut ( <span class="italique">Hippoglossus stenolepis</span> ) and characterization of its sex‐determining genomic region
10.1111/1755-0998.13641 · 2022 · External reference
Integration of the Genetic Map and Genome Assembly of Fugu Facilitates Insights into Distinct Features of Genome Evolution in Teleosts and Mammals
10.1093/gbe/evr041 · 2011 · External reference
The medaka draft genome and insights into vertebrate genome evolution
10.1038/nature05846 · 2007 · External reference
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
10.1093/molbev/mst010 · 2013 · External reference
Unpublished Mediterranean records of marine alien and cryptogenic species
10.3391/bir.2020.9.2.01 · 2020 · External reference
The Genome of the Self-Fertilizing Mangrove Rivulus Fish,<span class="italique">Kryptolebias marmoratus</span>: A Model for Studying Phenotypic Plasticity and Adaptations to Extreme Environments
10.1093/gbe/evw145 · 2016 · External reference
Some properties and cDNA cloning of proteinaceous toxins from two species of lionfish (Pterois antennata and Pterois volitans)
10.1016/j.toxicon.2011.08.010 · 2011 · External reference
Proteinaceous toxins from three species of scorpaeniform fish (lionfish Pterois lunulata, devil stinger Inimicus japonicus and waspfish Hypodytes rubripinnis): Close similarity in properties and primary structures to stonefish toxins
10.1016/j.toxicon.2013.04.021 · 2013 · External reference
ckitsoulis/Pterois-miles-Genome: v1.0.0 (v1.0.0)
10.5281/zenodo.8167419 · 2023 · External reference
ckitsoulis/ELDAR: v1.0.0 (v1.0.0).
10.5281/zenodo.8167397 · 2023 · External reference
Conflicting interests and growing importance of non‐indigenous species in commercial and recreational fisheries of the Mediterranean Sea
10.1111/fme.12531 · 2022 · External reference
A lionfish (Pterois miles) invasion has begun in the Mediterranean Sea
10.1186/s41200-016-0065-y · 2016 · External reference
Assembly of long, error-prone reads using repeat graphs
10.1038/s41587-019-0072-8 · 2019 · External reference
SANS: high-throughput retrieval of protein sequences allowing 50% mismatches
10.1093/bioinformatics/bts417 · 2012 · External reference
Circos: An information aesthetic for comparative genomics
10.1101/gr.092759.109 · 2009 · External reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
The Atlantic salmon genome provides insights into rediploidization
10.1038/nature17164 · 2016 · External reference
The seahorse genome and the evolution of its specialized morphology
10.1038/nature20595 · 2016 · External reference
Chromosome‐level genome assembly of the endangered humphead wrasse <span class="italique">Cheilinus undulat</span> <span class="italique">u</span> <span class="italique">s</span> : Insight into the expansion of opsin genes in fishes
10.1111/1755-0998.13429 · 2021 · External reference
An Updated Genome Assembly Improves Understanding of the Transcriptional Regulation of Coloration in Midas Cichlid
10.3389/fmars.2022.950573 · 2022 · External reference
Data quality and quantity for invasive species: A case study of the lionfishes
10.1111/faf.12374 · 2019 · External reference
Transposable Elements: Classification, Identification, and Their Use As a Tool For Comparative Genomics
10.1007/978-1-4939-9074-0_6 · 2019 · External reference
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
10.1093/molbev/msab199 · 2021 · External reference
Origin and Diversification of Meprin Proteases
10.1371/journal.pone.0135924 · 2015 · External reference
The cavefish genome reveals candidate genes for eye loss
10.1038/ncomms6307 · 2014 · External reference
CAFE 5 models variation in evolutionary rates among gene families
10.1093/bioinformatics/btaa1022 · 2020 · External reference
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
10.1093/molbev/msaa015 · 2020 · External reference
GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene Family Tree Inference under Gene Duplication, Transfer, and Loss
10.1093/molbev/msaa141 · 2020 · External reference
Improved contiguity of the threespine stickleback genome using long-read sequencing
10.1093/g3journal/jkab007 · 2021 · External reference
The First Highly Contiguous Genome Assembly of Pikeperch (Sander lucioperca), an Emerging Aquaculture Species in Europe
10.3390/genes10090708 · 2019 · External reference
Karyotype of the invasive species Pterois volitans (Scorpaeniformes: Scorpaenidae) from Margarita Island, Venezuela
10.15517/rbt.v62i4.13029 · 2014 · External reference
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
10.1186/s13059-019-1905-y · 2019 · External reference
The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate
10.1186/s13742-016-0144-3 · 2016 · External reference
Chromosome genome assembly for the meagre, Argyrosomus regius, reveals species adaptations and sciaenid sex-related locus evolution
10.3389/fgene.2022.1081760 · 2023 · External reference
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
10.1093/bioinformatics/bty633 · 2018 · External reference
Genome Sequencing and Transcriptome Analysis Reveal Recent Species-Specific Gene Duplications in the Plastic Gilthead Sea Bream (Sparus aurata)
10.3389/fmars.2019.00760 · 2019 · External reference
BEDTools: a flexible suite of utilities for comparing genomic features
10.1093/bioinformatics/btq033 · 2010 · External reference
Rapture‐ready darters: Choice of reference genome and genotyping method (whole‐genome or sequence capture) influence population genomic inference in <span class="italique">Etheostoma</span>
10.1111/1755-0998.13275 · 2020 · External reference
The Landscape of Extreme Genomic Variation in the Highly Adaptable Atlantic Killifish
10.1093/gbe/evx023 · 2017 · External reference
The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei
10.1371/journal.pone.0102089 · 2014 · External reference
A chromosome-scale genome assembly of the false clownfish, Amphiprion ocellaris
10.1093/g3journal/jkac074 · 2022 · External reference
The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits
10.1038/ng.2604 · 2013 · External reference
Pterois volitans and Pterois miles: Two Valid Species
10.2307/1444950 · 1986 · External reference
Evolution and diversity of transposable elements in fish genomes
10.1038/s41598-019-51888-1 · 2019 · External reference
Chromosome-level genome assembly of the female western mosquitofish (Gambusia affinis)
10.1093/gigascience/giaa092/ · 2020 · External reference
Chromosome-Level Genome Assembly of the Asian Red-Tail Catfish (Hemibagrus wyckioides)
10.3389/fgene.2021.747684 · 2021 · External reference
X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species
10.1186/s12864-015-2361-z · 2016 · External reference
Phylogeny and Taxonomy of Flatheads, Scorpionfishes, Sea Robins, and Stonefishes (Percomorpha: Scorpaeniformes) and the Evolution of the Lachrymal Saber
10.1643/cg-17-669 · 2018 · External reference
Evolution and Diversity of Transposable Elements in Vertebrate Genomes
10.1093/gbe/evw264 · 2017 · External reference
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
10.1093/bioinformatics/btn013 · 2008 · External reference
Transposable elements as agents of rapid adaptation may explain the genetic paradox of invasive species
10.1111/mec.13089 · 2015 · External reference
Chromosome‐level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of nanopore sequencing, Bionano and Hi‐C technology
10.1111/1755-0998.13190 · 2020 · External reference
Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences
10.1002/0471250953.bi0410s25 · 2009 · External reference
Genome of the Rio Pearlfish (Nematolebias whitei), a bi-annual killifish model for Eco-Evo-Devo in extreme environments
10.1093/g3journal/jkac045 · 2022 · External reference
A high-quality de novo genome assembly of one swamp eel (Monopterus albus) strain with PacBio and Hi-C sequencing data
10.1093/g3journal/jkaa032 · 2020 · External reference
European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation
10.1038/ncomms6770 · 2014 · External reference
PANNZER—A practical tool for protein function prediction
10.1002/pro.4193 · 2021 · External reference
Purification, properties and cDNA cloning of neoverrucotoxin (neoVTX), a hemolytic lethal factor from the stonefish Synanceia verrucosa venom
10.1016/j.bbagen.2006.08.017 · 2006 · External reference
Fast and accurate de novo genome assembly from long uncorrected reads
10.1101/gr.214270.116 · 2017 · External reference
Occurrence of Pterois miles in the Island of Kefalonia (Greece): the Northernmost Dispersal Record in the Mediterranean Sea
10.1007/s41208-019-00175-x · 2019 · External reference
Leveraging multiple transcriptome assembly methods for improved gene structure annotation
10.1093/gigascience/giy093 · 2018 · External reference
Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding
10.1371/journal.pgen.1005954 · 2016 · External reference
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
10.1371/journal.pone.0112963 · 2014 · External reference
Whole Genome Sequencing of the Giant Grouper (Epinephelus lanceolatus) and High-Throughput Screening of Putative Antimicrobial Peptide Genes
10.3390/md17090503 · 2019 · External reference
Chromosome-level assembly and annotation of the blue catfish Ictalurus furcatus, an aquaculture species for hybrid catfish reproduction, epigenetics, and heterosis studies
10.1093/gigascience/giac070 · 2022 · External reference
Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly
10.1038/s41559-018-0473-y · 2018 · External reference
Jalview Version 2—a multiple sequence alignment editor and analysis workbench
10.1093/bioinformatics/btp033 · 2009 · External reference
Phylogeography of Lionfishes (Pterois) Indicate Taxonomic Over Splitting and Hybrid Origin of the Invasive Pterois volitans
10.1093/jhered/esx056 · 2017 · External reference
The Genomes of Two Billfishes Provide Insights into the Evolution of Endothermy in Teleosts
10.1093/molbev/msab035 · 2021 · External reference
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
10.1093/bioinformatics/bti310 · 2005 · External reference
Comparative transcriptome analyses of venom glands from three scorpionfishes
10.1016/j.ygeno.2018.11.012 · 2019 · External reference
Draft genomes of female and male turbot Scophthalmus maximus
10.1038/s41597-020-0426-6 · 2020 · External reference
DeepTE: a computational method for de novo classification of transposons with convolutional neural network
10.1093/bioinformatics/btaa519 · 2020 · External reference
Chromosome‐level genome assembly of Triplophysa tibetana, a fish adapted to the harsh high‐altitude environment of the Tibetan Plateau
10.1111/1755-0998.13021 · 2019 · External reference
Using ggtree to Visualize Data on Tree‐Like Structures
10.1002/cpbi.96 · 2020 · External reference
Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments
10.1186/s12864-018-4516-1 · 2018 · External reference
0s and 1s in marine molecular research: a regional HPC perspective
10.1093/gigascience/giab053 · 2021 · External reference
Genome assembly and annotation at the chromosomal level of first Pleuronectidae: Verasper variegatus provides a basis for phylogenetic study of Pleuronectiformes
10.1016/j.ygeno.2021.01.024 · 2021 · External reference
Chromosome‐level assembly of southern catfish (silurus meridionalis) provides insights into visual adaptation to nocturnal and benthic lifestyles
10.1111/1755-0998.13338 · 2021 · External reference