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References from Within-species variation in the gut microbiome of medaka (Oryzias latipes) is driven by the interaction of light intensity and genetic background. Local targets link to admitted publications; unresolved targets remain external evidence.
Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?
10.1016/j.tree.2016.06.008 · 2016 · External reference
hilldiv: an R package for the integral analysis of diversity based on Hill numbers
10.1101/545665 · 2019 · External reference
A guide to the application of Hill numbers to DNA‐based diversity analyses
10.1111/1755-0998.13014 · 2019 · External reference
PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?
10.1890/12-2010.1 · 2013 · External reference
Climate warming reduces gut microbiota diversity in a vertebrate ectotherm
10.1038/s41559-017-0161 · 2017 · External reference
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
10.1038/nmeth.2276 · 2013 · External reference
Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch)
10.1111/ele.12301 · 2014 · External reference
Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity
10.1111/mec.12846 · 2014 · External reference
Density‐dependent natural selection mediates harvest‐induced trait changes
10.1111/ele.13677 · 2021 · External reference
DADA2: High-resolution sample inference from Illumina amplicon data
10.1038/nmeth.3869 · 2016 · External reference
Distance-Based Functional Diversity Measures and Their Decomposition: A Framework Based on Hill Numbers
10.1371/journal.pone.0100014 · 2014 · External reference
Sustaining Fisheries Yields Over Evolutionary Time Scales
10.1126/science.1074085 · 2002 · External reference
Human predators outpace other agents of trait change in the wild
10.1073/pnas.0809235106 · 2009 · External reference
Selection for small body size favours contrasting sex-specific life histories, boldness and feeding in medaka, Oryzias latipes
10.1186/s12862-019-1460-x · 2019 · External reference
Aquaculture industry prospective from gut microbiome of fish and shellfish: An overview
10.1111/jpn.13619 · 2021 · External reference
The meta-gut: community coalescence of animal gut and environmental microbiomes
10.1038/s41598-021-02349-1 · 2021 · External reference
Freshwater zooplankton microbiome composition is highly flexible and strongly influenced by the environment
10.1111/mec.15815 · 2021 · External reference
Empirical evidence for competition-driven semelparity in wild medaka
10.1007/s10144-016-0551-4 · 2016 · External reference
Within-species variation in the gut microbiome of medaka (Oryzias latipes) is driven by the interaction of light intensity and genetic background. Dataset.
10.6084/m9.figshare.22117673.v2 · 2023 · External reference
Ecological ramifications of adaptation to size-selective mortality
10.1098/rsos.210842 · 2021 · External reference
Density-dependent consequences of size-selective induced life-history changes to population fitness in medaka (<span class="italique">Oryzias latipes</span>)
10.1139/cjfas-2019-0406 · 2020 · External reference
An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
10.1186/2049-2618-2-6 · 2014 · External reference
Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing
10.1016/j.envint.2020.105604 · 2020 · External reference
Trophic Cascades in a Formerly Cod-Dominated Ecosystem
10.1126/science.1113075 · 2005 · External reference
Fish Gut Microbiome: A Primer to an Emerging Discipline in the Fisheries Sciences
10.1002/fsh.10379 · 2020 · External reference
A new view of the fish gut microbiome: Advances from next-generation sequencing
10.1016/j.aquaculture.2015.06.033 · 2015 · External reference
Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?
10.3389/fmicb.2016.00214 · 2016 · External reference
Not all animals need a microbiome
10.1093/femsle/fnz117 · 2019 · External reference
The functionality of the gastrointestinal microbiome in non-human animals
10.1186/s40168-015-0113-6 · 2015 · External reference
Marine food web perspective to fisheries‐induced evolution
10.1111/eva.13259 · 2021 · External reference
Stochastic microbiome assembly depends on context
10.1073/pnas.2115877119 · 2022 · External reference
Getting closer to the host-microbe evolutionary relationship
10.24072/pci.microbiol.100012 · 2023 · External reference
Chironomids’ Relationship with Aeromonas Species
10.3389/fmicb.2016.00736 · 2016 · External reference
Unidirectional response to bidirectional selection on body size II. Quantitative genetics
10.1002/ece3.6783 · 2020 · External reference
emmeans: estimated marginal means, aka least-squares means. R package version 1.6.3.
2021 · External reference
Diversity and activity of cellulolytic bacteria, isolated from the gut contents of grass carp (Ctenopharyngodon idellus) (Valenciennes) fed on Sudan grass (Sorghum sudanense) or artificial feedstuffs
10.1111/are.12478 · 2014 · External reference
microeco: an R package for data mining in microbial community ecology
10.1093/femsec/fiaa255 · 2020 · External reference
The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels
10.1038/srep24340 · 2016 · External reference
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
10.1371/journal.pone.0061217 · 2013 · External reference
Evolutionary and Ecological Consequences of Gut Microbial Communities
10.1146/annurev-ecolsys-110617-062453 · 2019 · External reference
PCR-TTGE Analysis of 16S rRNA from Rainbow Trout (Oncorhynchus mykiss) Gut Microbiota Reveals Host-Specific Communities of Active Bacteria
10.1371/journal.pone.0031335 · 2012 · External reference
When Should Harvest Evolution Matter to Population Dynamics?
10.1016/j.tree.2016.04.001 · 2016 · External reference
vegan: community ecology package. R package version 2.5-7.
2020 · External reference
Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream
10.1186/s40168-020-00922-w · 2020 · External reference
Heat‐induced shift in coral microbiome reveals several members of the Rhodobacteraceae family as indicator species for thermal stress in <span class="italique">Porites lutea</span>
10.1002/mbo3.935 · 2019 · External reference
R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria
2021 · External reference
Drivers of Microbiome Biodiversity: A Review of General Rules, Feces, and Ignorance
10.1128/mbio.01294-18 · 2018 · External reference
Unidirectional response to bidirectional selection on body size. I. Phenotypic, life‐history, and endocrine responses
10.1002/ece3.6713 · 2020 · External reference
psych: Procedures for personality and psychological research, Northwestern University, Evanston, Illinois, USA, Version = 2.1.9
2021 · External reference
mixOmics: An R package for ‘omics feature selection and multiple data integration
10.1371/journal.pcbi.1005752 · 2017 · External reference
Evolution Of Social Behavior In A Resource-Rich, Structured Environment: Selection Experiments With Medaka (Oryzias Latipes)
10.1111/j.1558-5646.1993.tb02106.x · 1993 · External reference
The pace of modern life, revisited
10.1111/mec.16299 · 2021 · External reference
Community assembly of a euryhaline fish microbiome during salinity acclimation
10.1111/mec.13177 · 2015 · External reference
The Effects of Temperature on Animal Gut Microbiomes
10.3389/fmicb.2020.00384 · 2020 · External reference
Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs
10.1186/s40168-018-0427-2 · 2018 · External reference
Highly Reproducible 16S Sequencing Facilitates Measurement of Host Genetic Influences on the Stickleback Gut Microbiome
10.1128/msystems.00331-19 · 2019 · External reference
Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota
10.1038/ismej.2015.64 · 2015 · External reference
Vulnerability of the industrialized microbiota
10.1126/science.aaw9255 · 2019 · External reference
Unravelling the effects of the environment and host genotype on the gut microbiome
10.1038/nrmicro2540 · 2011 · External reference
Unresolved reference
1992 · External reference
Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis
10.1111/j.1365-294x.2012.05552.x · 2012 · External reference
Divergence across diet, time and populations rules out parallel evolution in the gut microbiomes of Trinidadian guppies
10.1038/ismej.2014.231 · 2015 · External reference
Fish Gut Microbiome: Current Approaches and Future Perspectives
10.1007/s12088-018-0760-y · 2018 · External reference
Fish intestinal microbiome: diversity and symbiosis unravelled by metagenomics
10.1111/jam.13415 · 2017 · External reference
Effects of full replacement of dietary fishmeal with insect meal from Tenebrio molitor on rainbow trout gut and skin microbiota
10.1186/s40104-021-00551-9 · 2021 · External reference
Inside the guts of the city: Urban-induced alterations of the gut microbiota in a wild passerine
10.1016/j.scitotenv.2017.09.035 · 2018 · External reference
The Main Aeromonas Pathogenic Factors
10.5402/2012/256261 · 2012 · External reference
Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys
10.1038/s41598-017-18435-2 · 2018 · External reference
Rapid, broad-scale gene expression evolution in experimentally harvested fish populations
10.1111/mec.14179 · 2017 · External reference
The evolutionary legacy of size‐selective harvesting extends from genes to populations
10.1111/eva.12268 · 2015 · External reference
Single and combined effects of microplastics, pyrethroid and food resources on the life-history traits and microbiome of Chironomus riparius
10.1016/j.envpol.2021.117848 · 2021 · External reference
Intestinal microbiota of healthy and unhealthy Atlantic salmon Salmo salar L. in a recirculating aquaculture system
10.1007/s00343-017-6203-5 · 2017 · External reference
Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
10.1128/aem.00062-07 · 2007 · External reference
Experimental harvesting of fish populations drives genetically based shifts in body size and maturation
10.1890/120229 · 2013 · External reference
