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References from A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence. Local targets link to admitted publications; unresolved targets remain external evidence.
On the existence of two forms of diphtheria bacillus—B. Diphtheriæ gravis and B. Diphtheriæ mitis—and a new medium for their differentiation and for the bacteriological diagnosis of diphtheria
10.1002/path.1700340506 · 1931 · External reference
Multidrug-resistant toxigenic Corynebacterium diphtheriae sublineage 453 with two novel resistance genomic islands
10.1099/mgen.0.000923 · 2023 · External reference
Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study
10.1016/s2666-5247(21)00094-x · 2021 · External reference
Improved quadruplex real-time PCR assay for the diagnosis of diphtheria
10.1099/jmm.0.001070 · 2019 · External reference
Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex
10.1016/j.resmic.2020.02.003 · 2020 · External reference
Outbreak of imported diphtheria with Corynebacterium diphtheriae among migrants arriving in Germany, 2022
10.2807/1560-7917.es.2022.27.46.2200849 · 2022 · External reference
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
10.1089/cmb.2012.0021 · 2012 · External reference
Corynebacterium diphtheriae and its relatives
10.1128/br.34.4.378-422.1970 · 1970 · External reference
Antimicrobial drug resistance in Corynebacterium diphtheriae mitis
10.3201/eid1711.110282 · 2011 · External reference
Microbiological and molecular characterization of Corynebacterium diphtheriae isolated in Algeria between 1992 and 2015
10.1016/j.cmi.2016.08.013 · 2016 · External reference
Whole genome sequencing suggests transmission of Corynebacterium diphtheriae-caused cutaneous diphtheria in two siblings, Germany, 2018
10.2807/1560-7917.es.2019.24.2.1800683 · 2019 · External reference
Increase in detection of Corynebacterium diphtheriae in Canada: 2006-2019
10.14745/ccdr.v45i11a04 · 2019 · External reference
Multilocus sequence typing identifies evidence for recombination and two distinct lineages of Corynebacterium diphtheriae
10.1128/jcm.00274-10 · 2010 · External reference
Diphtheria: A zoonotic disease in France?
10.1016/j.vaccine.2009.04.048 · 2009 · External reference
Whole-genome sequencing of Corynebacterium diphtheriae isolates recovered from an inner-city population demonstrates the predominance of a single molecular strain
10.1128/jcm.01651-19 · 2019 · External reference
AlienTrimmer: A tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads
10.1016/j.ygeno.2013.07.011 · 2013 · External reference
On the transformation of MinHash-based uncorrected distances into proper evolutionary distances for phylogenetic inference
10.12688/f1000research.26930.1 · 2020 · External reference
Identification and analysis of integrons and cassette arrays in bacterial genomes
10.1093/nar/gkw319 · 2016 · External reference
Geographically Diverse Clusters of Nontoxigenic Corynebacterium diphtheriae Infection, Germany, 2016-2017
10.3201/eid2407.172026 · 2018 · External reference
NGS-based phylogeny of diphtheria-related pathogenicity factors in different Corynebacterium spp. implies species-specific virulence transmission
10.1186/s12866-019-1402-1 · 2019 · External reference
Corynebacterium silvaticum sp. nov., a unique group of NTTB corynebacteria in wild boar and roe deer
10.1099/ijsem.0.004195 · 2020 · External reference
Taxonomic status of Corynebacterium diphtheriae biovar Belfanti and proposal of Corynebacterium belfantii sp. nov
10.1099/ijsem.0.003069 · 2018 · External reference
A modified Elek test for detection of toxigenic corynebacteria in the diagnostic laboratory
10.1128/jcm.35.2.495-498.1997 · 1997 · External reference
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
10.1038/s41598-021-91456-0 · 2021 · External reference
Fatal respiratory diphtheria caused by β-lactam-resistant Corynebacterium diphtheriae
10.1093/cid/ciaa1147 · 2020 · External reference
DIPHTOSCAN : A new tool for the genomic surveillance of diphtheria
10.24072/pci.infections.100080 · 2023 · External reference
International nomenclature for Corynebacterium diphtheriae ribotypes
10.1016/j.resmic.2003.12.005 · 2004 · External reference
Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae
10.1128/jcm.01581-21 · 2021 · External reference
Pipeline diptOscan: A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence
10.5281/zenodo.7774709 · 2023 · External reference
Supplementary appendix: A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence
10.5281/zenodo.812323 · 2023 · External reference
A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains
10.1093/molbev/msac135 · 2022 · External reference
Population genomics and antimicrobial resistance in Corynebacterium diphtheriae
10.1186/s13073-020-00805-7 · 2020 · External reference
Molecular and epidemiological characterisation of toxigenic and non-toxigenic C. diphtheriae, C. belfantii and C. ulcerans isolates identified in Spain from 2014 to 2019
10.1128/jcm.02410-20 · 2020 · External reference
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
10.1038/s41467-018-07641-9 · 2018 · External reference
BIGSdb: Scalable analysis of bacterial genome variation at the population level
10.1186/1471-2105-11-595 · 2010 · External reference
Ongoing toxin-positive diphtheria outbreaks in a federal asylum centre in Switzerland, analysis July to September 2022
10.2807/1560-7917.es.2022.27.44.2200811 · 2022 · External reference
Genomic insights that advance the species definition for prokaryotes
10.1073/pnas.0409727102 · 2005 · External reference
A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex
10.1038/s41467-021-24448-3 · 2021 · External reference
Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data
10.1093/bioinformatics/bts690 · 2013 · External reference
FLASH: fast length adjustment of short reads to improve genome assemblies
10.1093/bioinformatics/btr507 · 2011 · External reference
Corynebacterium diphtheriae employs specific minor pilins to target human pharyngeal epithelial cells
10.1111/j.1365-2958.2007.05630.x · 2007 · External reference
The types mitis, intermedius and gravis of Corynebacterium Diphtheriae: A Review of Observations during the Past Ten Years
10.1128/br.7.1.1-41.1943 · 1943 · External reference
Outbreak investigation for toxigenic Corynebacterium diphtheriae wound infections in refugees from Northeast Africa and Syria in Switzerland and Germany by whole genome sequencing
10.1016/j.cmi.2016.08.010 · 2016 · External reference
Detection of diphtheria toxin production by toxigenic corynebacteria using an optimized Elek test
10.1007/s15010-022-01903-x · 2022 · External reference
Canada's first case of a multidrug-resistant Corynebacterium diphtheriae strain, isolated from a skin abscess
10.1128/jcm.05296-11 · 2011 · External reference
Corynebacterium diphtheriae: genome diversity, population structure and genotyping perspectives
10.1016/j.meegid.2008.09.011 · 2009 · External reference
Toxin-production as related to the clinical severity of diphtheria
1941 · External reference
IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella
10.3390/microorganisms10040700 · 2022 · External reference
Mash: fast genome and metagenome distance estimation using MinHash
10.1186/s13059-016-0997-x · 2016 · External reference
Adhesion properties of toxigenic corynebacteria
10.3934/microbiol.2018.1.85 · 2018 · External reference
Interactions between the Re-Emerging Pathogen Corynebacterium diphtheriae and Host Cells
10.3390/ijms23063298 · 2022 · External reference
Studies on the molecular epidemiology of diphtheria
10.1016/s0140-6736(83)90449-x · 1983 · External reference
Functional characterization of the collagen-binding protein DIP2093 and its influence on host–pathogen interaction and arthritogenic potential of Corynebacterium diphtheriae
10.1099/mic.0.000467 · External reference
Epidemiological, clinical, and public health response characteristics of a large outbreak of diphtheria among the Rohingya population in Cox's Bazar, Bangladesh, 2017 to 2019: A retrospective study
10.1371/journal.pmed.1003587 · 2021 · External reference
Assembly and function of Corynebacterium diphtheriae pili
10.1007/978-94-007-7624-1_7 · 2014 · External reference
Adhesion by pathogenic corynebacteria
10.1007/978-94-007-0940-9_6 · 2011 · External reference
Highly toxinogenic but avirulent Park-Williams 8 strain of Corynebacterium diphtheriae does not produce siderophore
10.1128/iai.47.2.575-578.1985 · 1985 · External reference
A lack of genetic basis for biovar differentiation in clinically important Corynebacterium diphtheriae from whole genome sequencing
10.1016/j.meegid.2013.10.019 · 2014 · External reference
Evolution, epidemiology and diversity of Corynebacterium diphtheriae: New perspectives on an old foe
10.1016/j.meegid.2016.06.024 · 2016 · External reference
Searching whole genome sequences for biochemical identification features of emerging and reemerging pathogenic Corynebacterium species
10.1007/s10142-018-0610-3 · 2018 · External reference
Assessing the Genetic Diversity of Austrian Corynebacterium diphtheriae Clinical Isolates, 2011-2019
10.1128/jcm.02529-20 · 2020 · External reference
Whole Genome Sequencing for Surveillance of Diphtheria in Low Incidence Settings
10.3389/fpubh.2019.00235 · 2019 · External reference
The Corynebacterium xerosis composite transposon Tn5432 consists of two identical insertion sequences, designated IS1249, flanking the erythromycin resistance gene ermCX
10.1006/plas.1995.9995 · 1995 · External reference
Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequence
10.1016/s0147-619x(02)00115-4 · 2003 · External reference
Genome-wide comparison of Corynebacterium diphtheriae isolates from Australia identifies differences in the Pan-genomes between respiratory and cutaneous strains
10.1186/s12864-018-5147-2 · 2018 · External reference
Clinical and Epidemiological Aspects of Diphtheria: A Systematic Review and Pooled Analysis
10.1093/cid/ciz808 · 2020 · External reference
Diphtheria: Vaccine Preventable Diseases Surveillance Standards. https://www.who.int/publications/m/item/vaccine-preventable-diseases-surveillance-standards-diphtheria
2018 · External reference
Spatiotemporal persistence of multiple, diverse clades and toxins of Corynebacterium diphtheriae
10.1038/s41467-021-21870-5 · 2021 · External reference
Detection and Characterization of Diphtheria Toxin Gene-Bearing Corynebacterium Species through a New Real-Time PCR Assay
10.1128/jcm.00639-20 · 2020 · External reference
Genomic epidemiology of nontoxigenic Corynebacterium diphtheriae from King County, Washington State, USA between July 2018 and May 2019
10.1099/mgen.0.000467 · 2020 · External reference
Emergence and molecular characterisation of non-toxigenic tox gene-bearing Corynebacterium diphtheriae biovar mitis in the United Kingdom, 2003-2012
10.2807/1560-7917.es2014.19.22.20819 · 2014 · External reference
Antimicrobial Susceptibility and Treatment
10.1007/978-94-007-7624-1_12 · 2014 · External reference
Molecular Characterization of Corynebacterium diphtheriae Outbreak Isolates, South Africa, March-June 2015
10.3201/eid2308.162039 · 2017 · External reference