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References from DRomics, a workflow to exploit dose-response omics data in ecotoxicology. Local targets link to admitted publications; unresolved targets remain external evidence.
Application of transcriptomic data, visualization tools and bioinformatics resources for informing mode of action
10.1016/j.cotox.2018.05.003 · 2018 · External reference
Multimodel Inference
10.1177/0049124104268644 · 2004 · External reference
New features of DRomics workflow for improved analyze of dose-response omics data in ecotoxicology
10.24072/pci.ecotoxenvchem.100105 · 2023 · External reference
Metabolomics insight into the influence of environmental factors in responses of freshwater biofilms to the model herbicide diuron
10.1007/s11356-021-17072-7 · 2021 · External reference
Statistical Handling of Reproduction Data for Exposure-Response Modeling
10.1021/es502009r · 2014 · External reference
Differential modification of the C. elegans proteome in response to acute and chronic gamma radiation: Link with reproduction decline
10.1016/j.scitotenv.2019.04.039 · 2019 · External reference
Update: use of the benchmark dose approach in risk assessment
10.2903/j.efsa.2017.4658 · 2017 · External reference
FastBMD: an online tool for rapid benchmark dose–response analysis of transcriptomics data
10.1093/bioinformatics/btaa700 · 2020 · External reference
Characterizing Variability and Uncertainty Associated with Transcriptomic Dose–Response Modeling
10.1021/acs.est.2c04665 · 2022 · External reference
Concentration–response concept in ecotoxicoproteomics: Effects of different phenanthrene concentrations to the zebrafish (Danio rerio) embryo proteome
10.1016/j.ecoenv.2011.10.010 · 2012 · External reference
Mode of action evaluation for reduced reproduction in Daphnia pulex exposed to the insensitive munition, 1-methyl-3-nitro-1-nitroguanidine (MeNQ)
10.1007/s10646-021-02447-w · 2021 · External reference
A computational system for Bayesian benchmark dose estimation of genomic data in BBMD
10.1016/j.envint.2022.107135 · 2022 · External reference
DRomics: A Turnkey Tool to Support the Use of the Dose–Response Framework for Omics Data in Ecological Risk Assessment
10.1021/acs.est.8b04752 · 2018 · External reference
A multi-omics concentration-response framework uncovers novel understanding of triclosan effects in the chlorophyte Scenedesmus vacuolatus
10.1016/j.jhazmat.2020.122727 · 2020 · External reference
Meta-transcriptomics reveals stress adaptation processes in microbial communities differing in exposure history
2022 · External reference
Community metabolomics provides insights into mechanisms of pollution-induced community tolerance of periphyton
10.1016/j.scitotenv.2022.153777 · 2022 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
Soil exposed to silver nanoparticles reveals significant changes in community structure and altered microbial transcriptional profiles
10.1016/j.envpol.2019.113816 · 2020 · External reference
Estimating low toxic effects
10.1002/etc.5620160425 · 1997 · External reference
A systems biology approach reveals neuronal and muscle developmental defects after chronic exposure to ionising radiation in zebrafish
10.1038/s41598-019-56590-w · 2019 · External reference
NTP Research Report on National Toxicology Program Approach to Genomic
2018 · External reference
Gene selection and clustering for time-course and dose–response microarray experiments using order-restricted inference
10.1093/bioinformatics/btg093 · 2003 · External reference
BMDExpress 2: enhanced transcriptomic dose-response analysis workflow
10.1093/bioinformatics/bty878 · 2018 · External reference
R: A language and environment for statistical computing
2021 · External reference
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
10.1093/bioinformatics/btp616 · 2009 · External reference
limma powers differential expression analyses for RNA-sequencing and microarray studies
10.1093/nar/gkv007 · 2015 · External reference
Toward a unified approach to dose-response modeling in ecotoxicology
10.1002/etc.7 · 2010 · External reference
Effects of Chemical Compounds on the Activity of the <span class="italique">N</span>‐acetyl‐β‐D‐Glucosaminidase of the Marine Prawn, Palaemon serratus: Screening In Vitro
10.1002/etc.5567 · 2023 · External reference
BMDx: a graphical Shiny application to perform Benchmark Dose analysis for transcriptomics data
10.1093/bioinformatics/btaa030 · 2020 · External reference
High-throughput concentration-response analysis for omics datasets
10.1002/etc.3025 · 2015 · External reference
Multiomics Point of Departure (moPOD) Modeling Supports an Adverse Outcome Pathway Network for Ionizing Radiation
10.1021/acs.est.2c04917 · 2023 · External reference
Testing the Statistical Certainty of a Response to Increasing Doses of a Drug
10.2307/2530666 · 1985 · External reference
Untargeted and targeted analysis of sarin poisoning biomarkers in rat urine by liquid chromatography and tandem mass spectrometry
10.1007/s00216-021-03655-3 · 2021 · External reference
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
10.1016/j.xinn.2021.100141 · 2021 · External reference
BMDExpress: a software tool for the benchmark dose analyses of genomic data
10.1186/1471-2164-8-387 · 2007 · External reference
Global characterization of dose-dependent effects of cadmium in clam Ruditapes philippinarum
10.1016/j.envpol.2021.116443 · 2021 · External reference
Omics Advances in Ecotoxicology
10.1021/acs.est.7b06494 · 2018 · External reference
