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References from The genome sequence of the Montseny horsehair worm, Gordionus montsenyensis sp. nov., a key resource to investigate Ecdysozoa evolution. Local targets link to admitted publications; unresolved targets remain external evidence.
Evidence for a clade of nematodes, arthropods and other moulting animals
10.1038/387489a0 · 1997 · External reference
instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder
10.1186/s13059-020-02041-z · 2020 · External reference
Two new Gordionus species (Nematomorpha: Gordiida) from the southern Rocky Mountains (USA)
10.11646/zootaxa.3406.1.2 · 2012 · External reference
A molecular evolutionary framework for the phylum Nematoda
10.1038/32160 · 1998 · External reference
Trimmomatic: a flexible trimmer for Illumina sequence data
10.1093/bioinformatics/btu170 · 2014 · External reference
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
10.1093/nargab/lqaa108 · 2021 · External reference
GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins
10.1093/nargab/lqaa026 · 2020 · External reference
Rampant loss of universal metazoan genes revealed by a chromosome-level genome assembly of the parasitic Nematomorpha
10.1016/j.cub.2023.07.003 · 2023 · External reference
NanoPack: visualizing and processing long-read sequencing data
10.1093/bioinformatics/bty149 · 2018 · External reference
Hairworms found in Scottish agricultural land, with descriptions of two new species of Gordionus Muller (Nematomorpha: Gordiidae)
10.1080/002229399299716 · 1999 · External reference
STAR: ultrafast universal RNA-seq aligner
10.1093/bioinformatics/bts635 · 2012 · External reference
MetazoaPhylogenomicsLab/ChromosomeLevelGenomes: Chromosome-level genome of Gordionus montsenyensis added to the repository (refgenomes)
10.5281/zenodo.10705540 · 2024 · External reference
MATEdb, a data repository of high-quality metazoan transcriptome assemblies to accelerate phylogenomic studies
10.24072/pcjournal.177 · 2022 · External reference
RepeatModeler2 for automated genomic discovery of transposable element families
10.1073/pnas.1921046117 · 2020 · External reference
DNA Primers for Amplification of Mitochondrial Cytochrome c Oxidase Subunit I from Diverse Metazoan Invertebrates
1994 · External reference
TSEBRA: transcript selector for BRAKER
10.1186/s12859-021-04482-0 · 2021 · External reference
Nematomorpha
1978 · External reference
Identifying and removing haplotypic duplication in primary genome assemblies
10.1093/bioinformatics/btaa025 · 2020 · External reference
Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms
10.1186/s12859-021-04118-3 · 2021 · External reference
Biology of the Phylum Nematomorpha
10.1016/s0065-308x(05)59004-3 · 2005 · External reference
Spanning the gap: experimental determination of paratenic host specificity of horsehair worms (Nematomorpha: Gordiida)
10.1111/j.1744-7410.2003.tb00068.x · 2003 · External reference
BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS
10.1093/bioinformatics/btv661 · 2015 · External reference
Ratatosk: hybrid error correction of long reads enables accurate variant calling and assembly
10.1186/s13059-020-02244-4 · 2021 · External reference
Significantly improving the quality of genome assemblies through curation
10.1093/gigascience/giaa153 · 2021 · External reference
ModelFinder: fast model selection for accurate phylogenetic estimates
10.1038/nmeth.4285 · 2017 · External reference
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
10.1093/molbev/mst010 · 2013 · External reference
Assembly of long, error-prone reads using repeat graphs
10.1038/s41587-019-0072-8 · 2019 · External reference
Scaling read aligners to hundreds of threads on general-purpose processors
10.1093/bioinformatics/bty648 · 2018 · External reference
Revisiting metazoan phylogeny with genomic sampling of all phyla
10.1098/rspb.2019.0831 · 2019 · External reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm
10.1093/nar/gku557 · 2014 · External reference
BUSCO: Assessing Genomic Data Quality and Beyond
10.1002/cpz1.323 · 2021 · External reference
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
10.1093/bioinformatics/btw663 · 2016 · External reference
yacrd and fpa: upstream tools for long-read genome assembly
10.1093/bioinformatics/btaa262 · 2020 · External reference
Cutadapt removes adapter sequences from high-throughput sequencing reads
10.14806/ej.17.1.200 · 2011 · External reference
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
10.1093/bioinformatics/btr011 · 2011 · External reference
hicstuff: Simple library/pipeline to generate and handle Hi-C data
10.5281/zenodo.4066363 · 2020 · External reference
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
10.1093/nar/gkz173 · 2019 · External reference
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
10.1093/molbev/msaa015 · 2020 · External reference
MITGARD: an automated pipeline for mitochondrial genome assembly in eukaryotic species using RNA-seq data
10.1093/bib/bbaa429 · 2021 · External reference
Embarking on a novel journey in metazoa evolution through the pioneering sequencing of a key underrepresented lineage
10.24072/pci.genomics.100252 · 2024 · External reference
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
10.1038/s41467-020-14998-3 · 2020 · External reference
Three new species of Paragordionus and Gordionus (Nematomorpha, Gordiida) from Spain and Turkey, with comments on the taxon Semigordionus
2008 · External reference
10.1515/9783110272536
10.1515/9783110272536 · 2013 · External reference
First Record of Millipeds as Hosts for Horsehair Worms (Nematomorpha) in North America
10.1656/045.016.0110 · 2009 · External reference
A new Gordionus MÜLLER, 1927 from Switzerland (Nematomorpha, Gordiida)
10.5962/bhl.part.117589 · 2010 · External reference
Redescription and compilation of Nearctic freshwater Nematomorpha (Gordiida), with the description of two new species
10.1635/0097-3157(2003)153[0077:raconf]2.0.co;2 · 2003 · External reference
Gordius gonzalezi, a new species of horsehair worms (Nematomorpha) from Spain
10.11646/zootaxa.4103.1.6 · 2016 · External reference
Observations on the morphology and taxonomy of two Parachordodes species (Nematomorpha, Gordioida, Chordodidae) in southern New England (USA)
10.1111/j.1469-7998.1991.tb03829.x · 1991 · External reference
New data from an enigmatic phylum: evidence from molecular sequence data supports a sister-group relationship between Loricifera and Nematomorpha
10.1111/j.1439-0469.2008.00478.x · 2008 · External reference
Using native and syntenically mapped cDNA alignments to improve <span class="italique">de novo</span> gene finding
10.1093/bioinformatics/btn013 · 2008 · External reference
Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences
10.1002/0471250953.bi0410s25 · 2009 · External reference
Do hairworms (Nematomorpha) manipulate the water seeking behaviour of their terrestrial hosts?
10.1046/j.1420-9101.2002.00410.x · 2002 · External reference
TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads
10.1093/gigascience/giaa094 · 2020 · External reference
